Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060705.seq
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)          27   6.8  
SB_33203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  

>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 368 PDWXSVSLXPFXKNFYXPHPXVLK 439
           P+   +   PF KNFY  HP + K
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITK 490


>SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)
          Length = 411

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 392 GVKQXPNLGDACSDLQRILFSHK--ILQILQXYCH 294
           GVKQ P L  +CS++Q   F+H   I  I    CH
Sbjct: 270 GVKQQPPLLPSCSEIQSEHFAHTSGIFPIALTPCH 304


>SB_33203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 278 TNYRRICCSXKFGTTVSTAIIPVTRHX*FSDXVEDVY 168
           T + +IC   K G T+ + +IP T    +    +D Y
Sbjct: 96  TPFTKICIGFKVGDTLKSTMIPYTASSLYDVIADDTY 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,052,399
Number of Sequences: 59808
Number of extensions: 108443
Number of successful extensions: 212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)