Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060705.seq
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine r...    28   3.4  
U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone...    27   6.0  

>AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 12 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 353 DLQRILFSHKILQILQXYCHRXQIETNYRRI 261
           D     +S  I QI+  +CH+ +++TN  RI
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRI 298


>U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 137, isoform a protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 SKFGGATNSAIIRLDLATVAVXLEDLEDFVGKKNSL 347
           SKF  +    +IR    T+A+ +E +E +  KK ++
Sbjct: 185 SKFSDSDKEELIRNSCFTIAIAIEAIESYFDKKKTV 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,954,421
Number of Sequences: 27780
Number of extensions: 84302
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)