Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060705.seq
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   4.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 117 CRIRHEETLRXKESIVXINIFNXIRKLXMSGYWNNSR 227
           CRI     +   E +   NIF   +   M GY NNS+
Sbjct: 183 CRINFGSWVHSGEEV---NIFLDKKGFHMDGYTNNSK 216


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 376 PIWATHVLTSREFFFP 329
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 376 PIWATHVLTSREFFFP 329
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 138 TLRXKESIVXINIFNXIRKLXMSGYWN 218
           TL    + V + IFN I  + + G+W+
Sbjct: 267 TLFLNMASVFMRIFNLICMMLLIGHWS 293


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 132 EETLRXKESIVXINIFNXIRKLXMSGYWN 218
           EE      + V + IFN I  + + G+W+
Sbjct: 233 EEVYFLNMASVFMRIFNLICMMLLIGHWS 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,893
Number of Sequences: 438
Number of extensions: 1137
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)