Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060703.seq
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.48 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   1.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 105  SVPSHRSNITARVTCSSPPLKIQNQ 179
            S  S+ +N+T  +T   PP+K+Q+Q
Sbjct: 951  SSASNVTNVTTNLTTILPPVKVQSQ 975


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/42 (19%), Positives = 24/42 (57%)
 Frame = +1

Query: 403 YTTDKAMGHPCEVFVIDTRTIDETVSGQAPILKWETQIQRLL 528
           ++T K++  P  +F++     D  ++ + P+L   + ++R++
Sbjct: 82  FSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERMI 123


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 1   PPPATCHHIVFIVIYNKLLNKILSKHETSYAARAPACHHTD 123
           PP  T + +V+I    KL N I  K       +    HH D
Sbjct: 85  PPNRTINSVVYIEHLTKLNNAIEEKRFELTNRKGVVFHHDD 125


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/42 (19%), Positives = 24/42 (57%)
 Frame = +1

Query: 403 YTTDKAMGHPCEVFVIDTRTIDETVSGQAPILKWETQIQRLL 528
           ++T K++  P  +F++     D  ++ + P+L   + ++R++
Sbjct: 82  FSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERMI 123


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 SAAKDSKPNVWWSLNGERLGTFNG 226
           SAA +  P V W+L+G  L T NG
Sbjct: 444 SAAGNPTPQVTWALDGFALPT-NG 466


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 SAAKDSKPNVWWSLNGERLGTFNG 226
           SAA +  P V W+L+G  L T NG
Sbjct: 444 SAAGNPTPQVTWALDGFALPT-NG 466


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 1   PPPATCHHIVFIVIYNKLLNKILSKHETSYAARAPACHH 117
           PP  T + +V+I    KL N +  K       +    HH
Sbjct: 206 PPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKGVVFHH 244


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 268 INLITGGGDSSCRLWDLETG 327
           IN+I    D+  RLW ++TG
Sbjct: 110 INIIRVRVDACDRLWGVDTG 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,893
Number of Sequences: 438
Number of extensions: 4181
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)