Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060703.seq
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 94 8e-20
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 94 8e-20
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 94 8e-20
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 93 2e-19
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 50 1e-06
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 48 4e-06
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 47 1e-05
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 47 1e-05
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 41 6e-04
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 40 0.001
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 38 0.004
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 38 0.008
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 38 0.008
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 38 0.008
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 37 0.013
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 36 0.018
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 36 0.018
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 36 0.031
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 36 0.031
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 35 0.041
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 35 0.041
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 35 0.054
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 34 0.071
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 34 0.071
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 34 0.071
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 34 0.071
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 34 0.071
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 34 0.071
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 34 0.094
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 34 0.094
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 33 0.12
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 33 0.12
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 33 0.12
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 33 0.12
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 33 0.12
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 33 0.12
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 33 0.22
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 33 0.22
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 32 0.29
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 32 0.29
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 32 0.29
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 32 0.29
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 32 0.38
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 32 0.38
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 32 0.38
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 32 0.38
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 32 0.38
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 31 0.50
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 31 0.50
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 31 0.50
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 31 0.66
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 31 0.66
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 31 0.66
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 31 0.66
At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf... 31 0.66
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 31 0.66
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 31 0.87
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 31 0.87
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 31 0.87
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 31 0.87
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 31 0.87
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 31 0.87
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 31 0.87
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 31 0.87
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 30 1.2
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea... 30 1.2
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 30 1.2
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 30 1.5
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 30 1.5
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 30 1.5
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 30 1.5
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 30 1.5
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 30 1.5
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 30 1.5
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 30 1.5
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 30 1.5
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 30 1.5
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 29 2.0
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 2.0
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 29 2.0
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 29 2.0
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 29 2.0
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 29 2.0
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 29 2.0
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 29 2.0
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 29 2.7
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 29 2.7
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 29 2.7
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 29 3.5
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 29 3.5
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 29 3.5
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 29 3.5
At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repe... 29 3.5
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 29 3.5
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 29 3.5
At3g02740.1 68416.m00266 aspartyl protease family protein contai... 29 3.5
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 28 4.7
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 28 4.7
At4g21530.1 68417.m03111 transducin family protein / WD-40 repea... 28 4.7
At1g69400.2 68414.m07968 transducin family protein / WD-40 repea... 28 4.7
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea... 28 4.7
At1g29320.1 68414.m03584 transducin family protein / WD-40 repea... 28 4.7
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 28 4.7
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 28 6.1
At5g23070.1 68418.m02697 thymidine kinase, putative similar to t... 28 6.1
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 28 6.1
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 28 6.1
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 28 6.1
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 28 6.1
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 28 6.1
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 27 8.1
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 27 8.1
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 27 8.1
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 27 8.1
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 27 8.1
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 27 8.1
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 27 8.1
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 93.9 bits (223), Expect = 8e-20
Identities = 38/75 (50%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Frame = +2
Query: 77 MKPLMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDA 256
M+P++++GH+R +T ++YNREGDLLFS AKD P +W++ NGERLGT+ GH G +WC D
Sbjct: 1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDV 60
Query: 257 T--GSQLISSQVVAT 295
+ S+LI+ T
Sbjct: 61 SRDSSRLITGSADQT 75
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +1
Query: 232 WCNMVP*RDWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTT 411
WC V RD S LITG D + +LWD+++GK + T K N+ R+ +F+ A TT
Sbjct: 56 WCCDVS-RD--SSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITT 112
Query: 412 DKAMGHPCEVFV 447
D + + V
Sbjct: 113 DHFVDRTAAIHV 124
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 519 KVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKE 635
++ +WG L++TI++G E + WD TGK + E
Sbjct: 150 RINRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLKQSDE 188
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +1
Query: 259 WQSIN--LITGGGDSSCRLWDLETGK 330
W +N +++GG D R+WD ETGK
Sbjct: 156 WGPLNQTIVSGGEDKVIRIWDAETGK 181
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 93.9 bits (223), Expect = 8e-20
Identities = 38/75 (50%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Frame = +2
Query: 77 MKPLMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDA 256
M+P++++GH+R +T ++YNREGDLLFS AKD P +W++ NGERLGT+ GH G +WC D
Sbjct: 1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDV 60
Query: 257 T--GSQLISSQVVAT 295
+ S+LI+ T
Sbjct: 61 SRDSSRLITGSADQT 75
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +1
Query: 232 WCNMVP*RDWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTT 411
WC V RD S LITG D + +LWD+++GK + T K N+ R+ +F+ A TT
Sbjct: 56 WCCDVS-RD--SSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITT 112
Query: 412 DKAMGHPCEVFV 447
D + + V
Sbjct: 113 DHFVDRTAAIHV 124
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 519 KVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKE 635
++ +WG L++TI++G E + WD TGK + E
Sbjct: 150 RINRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLKQSDE 188
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +1
Query: 259 WQSIN--LITGGGDSSCRLWDLETGK 330
W +N +++GG D R+WD ETGK
Sbjct: 156 WGPLNQTIVSGGEDKVIRIWDAETGK 181
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 93.9 bits (223), Expect = 8e-20
Identities = 38/75 (50%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Frame = +2
Query: 77 MKPLMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDA 256
M+P++++GH+R +T ++YNREGDLLFS AKD P +W++ NGERLGT+ GH G +WC D
Sbjct: 1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDV 60
Query: 257 T--GSQLISSQVVAT 295
+ S+LI+ T
Sbjct: 61 SRDSSRLITGSADQT 75
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +1
Query: 232 WCNMVP*RDWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTT 411
WC V RD S LITG D + +LWD+++GK + T K N+ R+ +F+ A TT
Sbjct: 56 WCCDVS-RD--SSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITT 112
Query: 412 DKAMGHPCEVFV 447
D + + V
Sbjct: 113 DHFVDRTAAIHV 124
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 519 KVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKE 635
++ +WG L++TI++G E + WD TGK + E
Sbjct: 150 RINRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLKQSDE 188
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +1
Query: 259 WQSIN--LITGGGDSSCRLWDLETGK 330
W +N +++GG D R+WD ETGK
Sbjct: 156 WGPLNQTIVSGGEDKVIRIWDAETGK 181
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 92.7 bits (220), Expect = 2e-19
Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Frame = +2
Query: 77 MKPLMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDA 256
M+P++++GH+R +T ++YNR GDLLFS AKD P VW++ NGERLGT+ GH G +WC D
Sbjct: 28 MRPILMKGHERPLTFLRYNRNGDLLFSCAKDHTPTVWFADNGERLGTYRGHSGAVWCCDI 87
Query: 257 T--GSQLISSQVVAT 295
+ S+LI+ T
Sbjct: 88 SRDSSRLITGSADQT 102
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +1
Query: 232 WCNMVP*RDWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTT 411
WC + RD S LITG D + +LWD+++GK + T K + R+ +FS + A TT
Sbjct: 83 WCCDIS-RD--SSRLITGSADQTAKLWDVKSGKELFTFKFGAPARSVDFSVGDHLAVITT 139
Query: 412 DKAMGHPCEVFV 447
D +G + V
Sbjct: 140 DHFVGTSSAIHV 151
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 519 KVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKE 635
K+ +WG L++TI++G E + WD TGK + E
Sbjct: 177 KINRAVWGPLNQTIVSGGEDAAIRIWDAETGKLLKQSDE 215
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +1
Query: 259 WQSIN--LITGGGDSSCRLWDLETGK 330
W +N +++GG D++ R+WD ETGK
Sbjct: 183 WGPLNQTIVSGGEDAAIRIWDAETGK 208
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = +2
Query: 83 PLMLQGHQRAITQIKYNR---EGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIW--C 247
PL+ GH R + + Y+ +G L SA+KDS+P + G+ +GTF GH G +W C
Sbjct: 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSQPMLRNGETGDWIGTFEGHKGAVWSSC 68
Query: 248 LD 253
LD
Sbjct: 69 LD 70
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 256 DWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFS 381
D ++ + D S +LWD TG + + + VR C FS
Sbjct: 70 DNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFS 111
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 304 RLWDLETGKNIATLKSNSSVRTCNFS 381
RLWD+ +GK + TL++ S V + S
Sbjct: 171 RLWDVRSGKIVQTLETKSPVTSAEVS 196
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +2
Query: 83 PLMLQGHQRAITQIKYNR---EGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIW 244
PL+ GH R + + Y+ +G L SA+KDS P + G+ +GTF GH G +W
Sbjct: 4 PLVCHGHSRPVVDVAYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVW 60
Score = 34.3 bits (75), Expect = 0.071
Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 498 KMGNTDSKVTSMIWGSLDETIITG-HEAGDLIQWDLRTGKKIHSVK 632
++GN+ + ++ W D TI++ + GD+ WD+R+ K +H+++
Sbjct: 135 EVGNSPGSIRTVEWLHSDNTILSSCTDTGDIRLWDIRSDKIVHTLE 180
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +1
Query: 256 DWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQ 396
D +I + D + ++W+ TG + + + VR C FS ++
Sbjct: 65 DKNAIRAASASADFTAKIWNALTGDELHSFEHKHIVRACAFSEDTHR 111
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 83 PLMLQGHQRAITQIKYNR---EGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIW--C 247
P + GH R + + Y+ +G L SA+KDS P + G+ +GTF GH G +W C
Sbjct: 9 PQVCHGHSRPVVDLFYSPITPDGFFLISASKDSHPMLRNGETGDWIGTFEGHKGAVWSSC 68
Query: 248 LD 253
LD
Sbjct: 69 LD 70
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 256 DWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFS 381
D ++ + D S +LWD TG + + + VR C FS
Sbjct: 70 DNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFS 111
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 304 RLWDLETGKNIATLKSNSSVRTCNFS 381
RLWD+ +GK + TL++ S V + S
Sbjct: 171 RLWDVRSGKIVQTLETKSPVTSAEVS 196
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 83 PLMLQGHQRAITQIKYNR---EGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIW--C 247
P + GH R + + Y+ +G L SA+KDS P + G+ +GTF GH G +W C
Sbjct: 9 PQVCHGHSRPVVDLFYSPITPDGFFLISASKDSHPMLRNGETGDWIGTFEGHKGAVWSSC 68
Query: 248 LD 253
LD
Sbjct: 69 LD 70
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 256 DWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFS 381
D ++ + D S +LWD TG + + + VR C FS
Sbjct: 70 DNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFS 111
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 304 RLWDLETGKNIATLKSNSSVRTCNFS 381
RLWD+ +GK + TL++ S V + S
Sbjct: 171 RLWDVRSGKIVQTLETKSPVTSAEVS 196
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDATGSQL 271
L GHQ+ +T I D L++A+KD +W +G+ G N GG + C+ + G L
Sbjct: 140 LDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCASGQCTGVLN-LGGEVGCIISEGPWL 198
Query: 272 I 274
+
Sbjct: 199 L 199
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Frame = +2
Query: 113 ITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCL--DATGSQLISSQV 286
+T + +N EG LL + + D + +W +LNGE + T + H G I+ L + G L++ V
Sbjct: 327 VTTLDWNGEGTLLATGSCDGQARIW-TLNGELISTLSKHKGPIFSLKWNKKGDYLLTGSV 385
Query: 287 VATV---PAGYGIWRQAKILQHSNPTL 358
T W+Q + HS PTL
Sbjct: 386 DRTAVVWDVKAEEWKQ-QFEFHSGPTL 411
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 98 GHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVI-WCLDATGSQL 271
GH+ + + ++ G+ + S + D ++W G+ + T+ G+GG+ C + G+++
Sbjct: 539 GHREPVYSLAFSPNGEYIASGSLDKSIHIWSIKEGKIVKTYTGNGGIFEVCWNKEGNKI 597
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 98 GHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
GHQ + +K++ G LL S + DS +W
Sbjct: 446 GHQGEVNCVKWDPTGSLLASCSDDSTAKIW 475
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGG 235
L H+ I +K+N++GD L + + D VW E F H G
Sbjct: 361 LSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVKAEEWKQQFEFHSG 408
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSL--NGE-----RLG-TFNGHGGVIW 244
+L GH + + ++++ D+LFS + D+ VWWS +GE LG + NGH +W
Sbjct: 158 VLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGESNNGHSSTVW 217
Query: 245 CL--DATGSQLIS 277
+ +A G ++++
Sbjct: 218 SISFNAAGDKMVT 230
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIW 244
L GHQ+ + + ++ +G + SA+ D +W + G+ + F GH G ++
Sbjct: 356 LTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVY 406
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHG 232
+ L GH A+T +K+ +G ++++ ++D +W + G+ + GHG
Sbjct: 235 ICLSGHTLAVTCVKWGGDG-IIYTGSQDCTIKMWETTQGKLIRELKGHG 282
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 253
+ +GH + Q+ ++ + LL S +KDS +W + GH ++ +D
Sbjct: 397 VFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVD 451
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 522 VTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKEHTH 644
VT + WG D I TG + + W+ GK I +K H H
Sbjct: 244 VTCVKWGG-DGIIYTGSQDCTIKMWETTQGKLIRELKGHGH 283
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSS 360
L +G GD++ RLWDL T + T K + +
Sbjct: 124 LASGSGDTTVRLWDLYTETPLFTCKGHKN 152
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD--AT 259
L QGH + + Y+ + LL + A D+K VW ++G TF H + L A
Sbjct: 343 LKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMAD 402
Query: 260 GSQLISSQVVATVPAGYGIWRQAKILQHSNPT 355
L+S+ + TV A + R ++ PT
Sbjct: 403 NHSLLSASLDGTVRA-WDFKRYKNYKTYTTPT 433
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD--AT 259
L QGH + + Y+ + LL + A D+K VW ++G TF H + L A
Sbjct: 383 LKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMAD 442
Query: 260 GSQLISSQVVATVPAGYGIWRQAKILQHSNPT 355
L+S+ + TV A + R ++ PT
Sbjct: 443 NHSLLSASLDGTVRA-WDFKRYKNYKTYTTPT 473
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 101 HQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCL 250
H ++ +K+ R LFS KD W + E L T GH IWCL
Sbjct: 623 HGDSVMGVKFVRNTHYLFSIGKDRLVKYWDADKFEHLLTLEGHHAEIWCL 672
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 101 HQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGH 229
H+ A+T ++YN+ G +L S +KD+ +W + L GH
Sbjct: 105 HKGAVTALRYNKVGSMLASGSKDNDIILWDVVGESGLFRLRGH 147
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 253
L+GH+ +T + + G L S++KD VW + +GH +W +D
Sbjct: 144 LRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEVWSVD 197
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFN-GHGGVIWC 247
L+GHQ + + +N G LL S + D + N+W + + L + + GH I+C
Sbjct: 46 LEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFC 98
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +1
Query: 280 TGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTTDKAMGHPCEVFVIDTR 459
+GG D LWDL GK + +L++NS + FS + Y T+ H +++ ++++
Sbjct: 211 SGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE----HGIKIWDLESK 266
Query: 460 TIDE 471
+I E
Sbjct: 267 SIVE 270
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 35.5 bits (78), Expect = 0.031
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSS-VRTCNF 378
+ TG DSS ++DL +G +A LK +SS VR CN+
Sbjct: 416 IYTGSNDSSVYIYDLVSGDKVAVLKHHSSPVRDCNW 451
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGH 229
L+ +GH R++ I + ++G L S DS VW G + F GH
Sbjct: 375 LLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGH 422
Score = 35.5 bits (78), Expect = 0.031
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 89 MLQGHQRAITQIKYN-REGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDATGS 265
++ H ++Q+KY +EG L +A+ D K N+W + + + GH + LD T
Sbjct: 460 IIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITA- 518
Query: 266 QLISSQVVATV 298
S +ATV
Sbjct: 519 ---DSSCIATV 526
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 286 GGDSSCRLWDLETGKNIATLKSN-SSVRTCNFSYSAYQAA 402
G DS R+WDL TG++I + + V + NFS + Y A
Sbjct: 400 GLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLA 439
Score = 31.1 bits (67), Expect = 0.66
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +1
Query: 271 NLITGGGDSSCRLWDLETGKNIATLKSNSSV 363
+L +GG D+ CR+WDL K++ + +++++
Sbjct: 437 HLASGGEDNQCRIWDLRMRKSLYIIPAHANL 467
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 95 QGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 253
+GH R + +++ +G + S +D+ VW G+ L F H G I LD
Sbjct: 233 KGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLD 285
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSN 354
+++GG D+ ++WDL GK + KS+
Sbjct: 251 IVSGGEDNVVKVWDLTAGKLLHEFKSH 277
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 558 IITGHEAGDLIQWDLRTGKKIHSVKEH 638
I++G E + WDL GK +H K H
Sbjct: 251 IVSGGEDNVVKVWDLTAGKLLHEFKSH 277
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGT 217
M++ H I+ + +NR+G L+ SA+ D +W + G L T
Sbjct: 165 MIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKT 207
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNS 357
+++G D + R+W+++TGK + +K++S
Sbjct: 143 IVSGSFDETIRIWEVKTGKCVRMIKAHS 170
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 34.7 bits (76), Expect = 0.054
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGE--RLGTFNGHGGVIWCLDAT 259
++L GH A+ +K+N G L+ S + D + W ++G+ GH I L T
Sbjct: 47 MLLSGHPSAVYTMKFNPAGTLIASGSHD-REIFLWRVHGDCKNFMVLKGHKNAILDLHWT 105
Query: 260 --GSQLISSQVVATVPA 304
GSQ++S+ TV A
Sbjct: 106 SDGSQIVSASPDKTVRA 122
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSS-VRTC 372
+++ D + R WD+ETGK I + +SS V +C
Sbjct: 111 IVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSC 144
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 113 ITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVI--WCLDATGSQLISS 280
IT + ++ D +F+ D+ VW GE T GH I L GS L+++
Sbjct: 183 ITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTN 240
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSSVRT 369
+ TGG D+ ++WDL G+ TL+ + T
Sbjct: 195 IFTGGVDNDVKVWDLRKGEATMTLEGHQDTIT 226
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
+ L+GHQ IT + + +G L + D+K VW
Sbjct: 216 MTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVW 249
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 522 VTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKEHT 641
+ + W S I++ + WD+ TGK+I + EH+
Sbjct: 99 ILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHS 138
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 34.3 bits (75), Expect = 0.071
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 95 QGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 253
+GH R + +++ +G + S +D+ VW G+ L F H G I LD
Sbjct: 140 KGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLD 192
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSN 354
+++GG D+ ++WDL GK + KS+
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKSH 184
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 34.3 bits (75), Expect = 0.071
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 95 QGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 253
+GH R + +++ +G + S +D+ VW G+ L F H G I LD
Sbjct: 140 KGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLD 192
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSN 354
+++GG D+ ++WDL GK + KS+
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKSH 184
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGH 229
L+GH+R I ++++ + +A+ D +W +G L TF GH
Sbjct: 537 LKGHKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGH 582
Score = 30.7 bits (66), Expect = 0.87
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 95 QGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCL----DATG 262
+GH+ + + + G LL +A D K VW G F GH GV+ + D+
Sbjct: 99 KGHEGPVMGMACHASGGLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNK 158
Query: 263 SQLISSQVVATV 298
+ LIS ATV
Sbjct: 159 NILISGSDDATV 170
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
+++ H A+T I + +G LFSA +D N+W
Sbjct: 187 IMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLW 219
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +2
Query: 95 QGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDATGSQLI 274
+GH ++ + + +G S D +W E + T++ H +W L A G +
Sbjct: 580 EGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTSECIATYDQHEDKVWAL-AVGKK-- 636
Query: 275 SSQVVAT 295
++++AT
Sbjct: 637 -TEMIAT 642
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVW-WSLNGERLGTFNGH 229
L GH+ + +++N GD+L S + D + +W W +L +GH
Sbjct: 51 LNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWNWLSGSRKLSYPSGH 97
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSSV 363
++TGG DS CR+WD+ T I L +S V
Sbjct: 269 VLTGGRDSVCRVWDIRTKMQIFVLPHDSDV 298
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 513 DSKVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKEH 638
DS V S++ D +ITG + WDLR GK + ++ H
Sbjct: 295 DSDVFSVLARPTDPQVITGSHDSTIKFWDLRYGKSMATITNH 336
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSN 354
+ITG DS+ + WDL GK++AT+ ++
Sbjct: 310 VITGSHDSTIKFWDLRYGKSMATITNH 336
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCL 250
L L GH + + + +FSA D + W + + +++GH ++CL
Sbjct: 206 LTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCL 260
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 34.3 bits (75), Expect = 0.071
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 95 QGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 253
+GH R I+ I++ +G + S D+ VW G+ L F H G I LD
Sbjct: 139 KGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLD 191
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSS-VRTCNF 378
L TG D + + WDLET + I + + ++ VR+ F
Sbjct: 199 LATGSADRTVKFWDLETFELIGSTRPEATGVRSIKF 234
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHG 232
+L+GH+ A+ ++N +G+ + KD +W G + T+ HG
Sbjct: 13 ILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHG 60
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 95 QGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 253
+GH R I+ I+++ +G + S D+ VW G+ L F H G I LD
Sbjct: 88 KGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLD 140
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSS-VRTCNF 378
L TG D + + WDLET + I T + ++ VR F
Sbjct: 148 LATGSADRTVKFWDLETFELIGTTRPEATGVRAIAF 183
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 98 GHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGH 229
GH+ + ++++ G+ L S + D+ VW + + T+ GH
Sbjct: 47 GHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGH 90
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDATGSQL 271
L GH++ ++ I D L++ +KD VW +G+ G GG I C+ + G L
Sbjct: 147 LDGHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQCTGVLK-LGGEIGCVLSEGPWL 205
Query: 272 I 274
+
Sbjct: 206 L 206
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGH 229
L GH+ + +K+N+ G+ L +A+KD ++ + L +F GH
Sbjct: 306 LHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGH 351
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 256 DWQSIN--LITGGGDSSCRLWDLETGKNIATLKSNSSV 363
DW L++GG D +LWD +G+ + +L + ++
Sbjct: 275 DWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNI 312
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 98 GHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVI 241
GH + + ++ LL S KD +W + +G L + +GH ++
Sbjct: 266 GHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIV 313
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSS 360
L+TGG DS CR+WD+ T I L + +
Sbjct: 275 LLTGGRDSVCRVWDIRTKMQIFALSGHDN 303
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 495 FKMGNTDSKVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKEH 638
F + D+ V S+ D ++TG + WDLR GK + ++ H
Sbjct: 296 FALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHH 343
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSN-SSVR 366
++TG D++ + WDL GK ++TL + SVR
Sbjct: 317 VVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVR 348
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCL 250
L L GH + + + +FSA D + W + + +++GH ++CL
Sbjct: 212 LTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCL 266
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWC 247
+L GHQR + ++ +G+ L +A+ D +W G+ + + GH C
Sbjct: 248 VLTGHQRWVWDCVFSVDGEFLVTASSDMTARLWSMPAGKEVKVYQGHHKATVC 300
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSSVRTC 372
L+T D + RLW + GK + + + C
Sbjct: 268 LVTASSDMTARLWSMPAGKEVKVYQGHHKATVC 300
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 280 TGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTTDKAM 423
+GG D LWDL GK + +L++ S + + FS + Y T+ ++
Sbjct: 210 SGGKDGVILLWDLAEGKKLYSLEAGSIIHSLCFSPNRYWLCAATENSI 257
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGH 229
L GH + + + +G S + D + +W GE F GH
Sbjct: 59 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGH 104
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 280 TGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTTDKAM 423
+GG D LWDL GK + +L++ S + + FS + Y T+ ++
Sbjct: 210 SGGKDGVILLWDLAEGKKLYSLEAGSIIHSLCFSPNRYWLCAATENSI 257
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 110 AITQIKYNREGDLLFSAAKDSKPNVWWSLNG-ERLGTFNGHGGVIWCLDATGSQLISSQV 286
A+T I ++ L++ + D N W N + G GH + CL A G+ + S
Sbjct: 302 AVTAIAVDQSATLVYCGSSDGTVNFWERENNMKNGGVLKGHKLAVLCLVAAGNLMFS--- 358
Query: 287 VATVPAGYGIWRQ 325
+ G +WR+
Sbjct: 359 -GSADLGIRVWRR 370
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 101 HQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVI--WCLDATGSQLI 274
H + +T + ++R+G L S + D + +G+ L F GH + + GS++I
Sbjct: 304 HSQGVTSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLKEFRGHTSYVNHAIFTSDGSRII 363
Query: 275 SSQVVATV 298
++ TV
Sbjct: 364 TASSDCTV 371
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 555 TIITGHEAGDLIQWDLRTGKKIHSVKEHT 641
T+ +GH G+L WD++TGK + V H+
Sbjct: 371 TVFSGHMDGNLRLWDIQTGKLLSEVAGHS 399
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 268 INLITGGGDSSCRLWDLETGKNIATLKSNSSVRT 369
+ + +G D + RLWD++TGK ++ + +SS T
Sbjct: 370 LTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVT 403
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 98 GHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHG 232
GH A+T + +R G+ + ++ +D+ NV+ + E GT G
Sbjct: 397 GHSSAVTSVSLSRNGNRILTSGRDNVHNVFDTRTLEICGTLRASG 441
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 256 DWQSINLITGGGDSSCRLWDLETGKNIATL 345
++ S L TGG D + ++WD +G I +L
Sbjct: 240 EYNSGTLFTGGQDRAVKMWDTNSGTLIKSL 269
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 235 CNMVP*RDWQSINLITGGGDSSCRLWDLETG 327
C VP D +LIT GD +C LWD+ TG
Sbjct: 162 CQYVPNED---AHLITSSGDQTCILWDVTTG 189
Score = 30.7 bits (66), Expect = 0.87
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 504 GNTDSKVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVK 632
G+T KV S+ W I++ + G LI W+ T +K H++K
Sbjct: 63 GHT-GKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIK 104
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 235 CNMVP*RDWQSINLITGGGDSSCRLWDLETG 327
C VP D +LIT GD +C LWD+ TG
Sbjct: 100 CQYVPNED---AHLITSSGDQTCILWDVTTG 127
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 513 DSKVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVK 632
D +V S+ W I++ + G LI W+ T +K H++K
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIK 42
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 235 CNMVP*RDWQSINLITGGGDSSCRLWDLETG 327
C VP D +LIT GD +C LWD+ TG
Sbjct: 162 CQYVPNED---AHLITSSGDQTCILWDVTTG 189
Score = 30.7 bits (66), Expect = 0.87
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 504 GNTDSKVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVK 632
G+T KV S+ W I++ + G LI W+ T +K H++K
Sbjct: 63 GHT-GKVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIK 104
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 268 INLITGGGDSSCRLWDL-ETGKNIATLKSN-SSVRTCNFS 381
+ TG D +CR+WD + +++A LK N +VR+ F+
Sbjct: 332 VTFATGNQDKTCRIWDTRKLSESVAVLKGNLGAVRSIRFT 371
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 268 INLITGGGDSSCRLWDL-ETGKNIATLKSN-SSVRTCNFS 381
+ TG D +CR+WD + +++A LK N +VR+ F+
Sbjct: 326 VTFATGNQDKTCRIWDTRKLSESVAVLKGNLGAVRSIRFT 365
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 256 DWQSINLITGGGDSSCRLWDLETGKNIATLKSNS 357
D QS ++ T GDS WD+E+GK T K +S
Sbjct: 168 DPQSGSVFTAAGDSCAYCWDVESGKIKMTFKGHS 201
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKS 351
++TG D + R+WD +TGK + + S
Sbjct: 216 ILTGSEDGTARIWDCKTGKCVKVIGS 241
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLET-GKNIATLKSN-SSVRTCNFS 381
L TG D++CRLWD+ ++ A LK N ++R F+
Sbjct: 305 LATGNQDTACRLWDIRNPSESFAVLKGNMGAIRGLKFT 342
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKN 333
L++ G DS RLWD+E+G+N
Sbjct: 327 LLSAGSDSRIRLWDIESGRN 346
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLG 214
+Q H+ +I IK++ +G L SA +D +W + ER G
Sbjct: 359 IQAHKGSIWSIKFSLDGRYLASAGEDCVIQIWKVVESERKG 399
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 98 GHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 253
GH+ I+ + ++ + + SA+ D +W G + T GH +C++
Sbjct: 69 GHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVN 120
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSSVRTC-NFS 381
+++ D + +LWD+ETG I TL +++ C NF+
Sbjct: 86 IVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFN 122
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGT 217
+L H +T + +NR+G L+ S++ D +W S G + T
Sbjct: 150 VLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKT 192
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 262 QSINLITGGGDSSCRLWDLETGKNIATLKSNS 357
QS +++G D + R+WD+ TGK + L ++S
Sbjct: 124 QSNMIVSGSFDETVRIWDVTTGKCLKVLPAHS 155
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 31.5 bits (68), Expect = 0.50
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Frame = +2
Query: 101 HQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD-ATGSQLIS 277
H +T + N L S +KD ++ + G+ + + N H + C+ + S I
Sbjct: 241 HTEGLTCLDINSNSSLAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIP 300
Query: 278 SQVVATVPAGYGIWRQAKILQHSNPTLL*EH 370
+ IW LQHS P + EH
Sbjct: 301 LAATGGMDKKLIIWD----LQHSTPRFICEH 327
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/75 (22%), Positives = 30/75 (40%)
Frame = +1
Query: 280 TGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTTDKAMGHPCEVFVIDTR 459
TGGGD LW + G A L + +C ++S Y + ++F +
Sbjct: 88 TGGGDDKAFLWKIGNGDWAAELPGHKDSVSC-LAFS-YDGQLLASGGLDGVVQIFDASSG 145
Query: 460 TIDETVSGQAPILKW 504
T+ + G ++W
Sbjct: 146 TLKCVLDGPGAGIEW 160
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 558 IITGHEAGDLIQWDLRTGKKIHSVKEHTH 644
I TG + LI W+ +T + IH VK H +
Sbjct: 212 ICTGSDDASLIVWNPKTCESIHIVKGHPY 240
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 83 PLMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD-AT 259
P + H+ +T + + L + + ++W SL G + T++GH + + +T
Sbjct: 321 PRFICEHEEGVTSLTWIGTSKYLATGCANGTVSIWDSLLGNCVHTYHGHQDAVQAISVST 380
Query: 260 GSQLISS 280
+ I S
Sbjct: 381 NTDFIVS 387
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 522 VTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKEHTHQ 647
VTS+ W + + TG G + WD G +H+ H HQ
Sbjct: 331 VTSLTWIGTSKYLATGCANGTVSIWDSLLGNCVHTY--HGHQ 370
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 31.1 bits (67), Expect = 0.66
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 519 KVTSMIWGSLDETIIT-GHEAGDLIQWDLRTGKK 617
+++S+ W S D +++ G+ GD++ WD G+K
Sbjct: 257 EISSLCWASTDGSVLAVGYVDGDILFWDFSDGQK 290
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 31.1 bits (67), Expect = 0.66
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
L GH + +T +K+ + DL+ +A+ D +W
Sbjct: 260 LTGHSKKVTSVKFVGDSDLVLTASADKTVRIW 291
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 31.1 bits (67), Expect = 0.66
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
L GH + +T +K+ + DL+ +A+ D +W
Sbjct: 260 LTGHSKKVTSVKFVGDSDLVLTASADKTVRIW 291
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 513 DSKVTSMIWGSLDETII-TGHEAGDLIQWDLRTGKKIHSVKEHTHQ 647
+S + + W +E + + E G L+ WD RT + H VK H +
Sbjct: 217 ESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHERE 262
>At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 447
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLET-GKNIATLKSN-SSVRTCNFS 381
L TG D++CRLWD+ +++ LK N ++R F+
Sbjct: 334 LATGNQDTTCRLWDVRNLSQSLKVLKGNMGAIRALRFT 371
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 31.1 bits (67), Expect = 0.66
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
L GH + +T IK+ + DL+ +A+ D +W
Sbjct: 260 LTGHSKKVTSIKFVGDTDLVLTASSDKTVRIW 291
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIW 244
+L GH + ++ GD + S++ D+ +W + L + GH +W
Sbjct: 413 LLLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVW 464
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +1
Query: 256 DWQ-SINLI-TGGGDSSCRLWDLETGK 330
DW + N I TG D + RLWD++TG+
Sbjct: 506 DWHPNCNYIATGSSDKTVRLWDVQTGE 532
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
L GH + + Y+ EG LL S + D +W
Sbjct: 579 LMGHNSCVWSLSYSGEGSLLASGSADCTVKLW 610
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGER 208
+Q H+ AI +K++ +G L SA +D VW + ER
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDER 285
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGER 208
+Q H+ AI +K++ +G L SA +D VW + ER
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDER 285
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLG 214
+Q H +I IK++ +G L SA +D ++W + E+ G
Sbjct: 409 IQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAEKKG 449
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 30.7 bits (66), Expect = 0.87
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 95 QGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDATGSQLI 274
+GH+ IT + + L+ SA+ D VW +G + GH G + + + Q
Sbjct: 344 RGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVLRGHTGAVTAIAFSPRQAS 403
Query: 275 SSQVVATVPAG 307
Q++++ G
Sbjct: 404 VYQLLSSSDDG 414
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 30.7 bits (66), Expect = 0.87
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 280 TGGGDSSCRLWDLETGKNIATLKSN-SSVRTCNFSYSAYQAA 402
+ G DS R+WDL T +NI + + V + +FS + Y A
Sbjct: 147 SSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLA 188
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 271 NLITGGGDSSCRLWDLETGK 330
+L +GG D+ CR+WDL K
Sbjct: 186 HLASGGEDNQCRIWDLRMRK 205
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCL 250
L+GH ++ + ++ + D++ S ++D VW + L TF W L
Sbjct: 244 LRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWIL 296
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 280 TGGGDSSCRLWDLET-GKNIATLKSN-SSVRTCNFS 381
TG D +CR+WD+ K++A L+ N ++R+ ++
Sbjct: 334 TGNQDKTCRVWDIRNLSKSVAVLRGNLGAIRSIRYT 369
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 235 CNMVP*RDWQSINLITGGGDSSCRLWDLETGKN 333
C+ V W+ +ITGG DS LWD G++
Sbjct: 151 CSSVQFIPWRPWEVITGGLDSKLVLWDFSKGRS 183
>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (5 copies, 2 below cutoff); related to
LACK protective antigen (GI:13625467) [Leishmania
donovani]
Length = 764
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 516 SKVTSMIWGSLDETIITGHEAGDLIQWDLRTGKK 617
++VT + + S + +G +AGD + W+L TGKK
Sbjct: 247 AEVTVLNFSSDGALLYSGVKAGDFVVWELGTGKK 280
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWS-LNGE 205
L GHQ + Q++++ G L S D +W S LNGE
Sbjct: 276 LSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSNLNGE 314
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLG-TFNGHGGVIWCLDATG 262
L L GH+ +I +I ++ +G + S + D +W + E +G GH +W +
Sbjct: 229 LRLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEIDSQEVVGPVLFGHSVRVWDCCISD 288
Query: 263 SQLISS 280
S ++++
Sbjct: 289 SLIVTA 294
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLG-TFNGHGGVIWCLDATG 262
L L GH+ +I +I ++ +G + S + D +W + E +G GH +W +
Sbjct: 229 LRLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEIDSQEVVGPVLFGHSVRVWDCCISD 288
Query: 263 SQLISS 280
S ++++
Sbjct: 289 SLIVTA 294
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 83 PLMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGH--GGVIWCLDA 256
P + +GH+ ++ + N G +L S + VW G + GH + LD+
Sbjct: 206 PTIAKGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDS 265
Query: 257 TGSQLIS 277
TG +S
Sbjct: 266 TGRFCLS 272
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 83 PLMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGH--GGVIWCLDA 256
P + +GH+ ++ + N G +L S + VW G + GH + LD+
Sbjct: 206 PTIAKGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDS 265
Query: 257 TGSQLIS 277
TG +S
Sbjct: 266 TGRFCLS 272
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWC 247
+L GH+R + ++ +G+ L +A+ D+ +W G+ + H C
Sbjct: 254 VLTGHERWVWDCDFSMDGEYLVTASSDTTARLWSMRAGKEEMVYQAHRKATVC 306
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSSVRTC 372
L+T D++ RLW + GK +++ C
Sbjct: 274 LVTASSDTTARLWSMRAGKEEMVYQAHRKATVC 306
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCL 250
L+GH ++ + ++ + D++ S ++D VW + + TF W L
Sbjct: 244 LRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWIL 296
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNF 378
L +G D S +LW + G +I T+K+ +++ F
Sbjct: 592 LASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF 626
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNF 378
L +G D S +LW + G +I T+K+ +++ F
Sbjct: 592 LASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF 626
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 501 MGNTDSKVTSMIWGSLDETIITGHEAGDLIQ--WDLRTGKKIHSVKEHT 641
+G S + S+ + D T I D + WD+R+GK++H +K HT
Sbjct: 976 VGRCSSAILSLEYD--DSTGILAAAGRDTVANIWDIRSGKQMHKLKGHT 1022
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 110 AITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGH 229
AI ++Y+ +L +A +D+ N+W +G+++ GH
Sbjct: 982 AILSLEYDDSTGILAAAGRDTVANIWDIRSGKQMHKLKGH 1021
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIAT 342
L++G GDS+ RLWD+ +G + T
Sbjct: 222 LMSGSGDSTVRLWDITSGSLLDT 244
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWW-SLNGERLGTFNGHGGVIWCLDATGS 265
+L + A+T + + +++ + D N W S G GH + CL G+
Sbjct: 319 VLLKQENAVTALAVKSQSSIVYCGSSDGLVNYWERSKRSFTGGILKGHKSAVLCLGIAGN 378
Query: 266 QLIS 277
L+S
Sbjct: 379 LLLS 382
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 86 LMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
+ L+GH+ A+T + ++ + + +A+KD VW
Sbjct: 283 MQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVW 316
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +2
Query: 74 NMKPLM-LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGH----GGV 238
N K +M L+GH + + ++ + +L S + D+ ++W G GH GV
Sbjct: 107 NWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGV 166
Query: 239 IWCLDATGSQLISSQVVATV 298
W D GS + S TV
Sbjct: 167 TW--DPIGSFIASQSDDKTV 184
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 149 LFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDATGSQLISSQVVATVPAGYGIWRQA 328
L S + D+ VW +NGE + T GH + + ++SS V T+ WR
Sbjct: 86 LVSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVAIDNEDIVSSSVDQTLKR----WRNG 141
Query: 329 KILQ 340
++++
Sbjct: 142 QLVE 145
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 143 DLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDATGSQLISS 280
DL F +A W+L+GE L GH +++ +DA S LI S
Sbjct: 201 DLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHSSGLIVS 246
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSN 354
L++G D+ +W+L G+NI TLK +
Sbjct: 86 LVSGSMDTFVFVWNLMNGENIQTLKGH 112
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 149 LFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDATGSQLISSQVVATVPAGYGIWRQA 328
L S + D+ VW +NGE + T GH + + ++SS V T+ WR
Sbjct: 86 LVSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVAIDNEDIVSSSVDQTLKR----WRNG 141
Query: 329 KILQ 340
++++
Sbjct: 142 QLVE 145
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 143 DLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDATGSQLISS 280
DL F +A W+L+GE L GH +++ +DA S LI S
Sbjct: 201 DLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHSSGLIVS 246
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSN 354
L++G D+ +W+L G+NI TLK +
Sbjct: 86 LVSGSMDTFVFVWNLMNGENIQTLKGH 112
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Frame = +2
Query: 62 KYFLNMKPLMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLG-TFNGHGGV 238
KY + L + A+T + ++ G ++ + D N W G GH
Sbjct: 281 KYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGSSDGLVNFWEREKQLNYGGILKGHKLA 340
Query: 239 IWCLDATGSQLISSQVVATV 298
+ CL+ GS + S T+
Sbjct: 341 VLCLEVAGSLVFSGSADKTI 360
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERL----GTFNGHGGVIWCLDAT 259
L+ H+ A+ + N +G +LFS + D VW + G GH I L
Sbjct: 276 LEKHKSAVNALALNDDGSVLFSGSCDRSILVWEREDTSNYMAVRGALRGHDKAILSLFNV 335
Query: 260 GSQLISSQVVATVPAGYGIWRQ 325
L+S TV IWR+
Sbjct: 336 SDLLLSGSADRTV----RIWRR 353
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 271 NLITGGGDSSCRLWDLETGKNIATLKSNSSV 363
++ TG GD++ + W L+ G + T+ + SV
Sbjct: 599 HVYTGSGDNTIKAWSLQDGSLLCTMSGHKSV 629
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLK 348
+ T G DS R+WD+E G +IA K
Sbjct: 177 VFTSGYDSIVRMWDMEEGLSIAASK 201
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 268 INLITGGGDSSCRLWDLET-GKNIATLKSN-SSVRTCNFS 381
+ TG D +CR+WD+ +++ LK N ++R+ ++
Sbjct: 332 VTFSTGNQDKTCRVWDIRNLSQSVTVLKGNLGAIRSIRYT 371
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 256 DWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTTDKAMG 426
D +N + G+SS + WDL T K + +++ ++ VR +++ T + G
Sbjct: 177 DPHDVNAVAATGESSVQFWDLRTMKKVNSIE-HAHVRGVDYNPKREHILVTAEDESG 232
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 537 WGSLDETIITGHEAGDLIQWDLRTGKKIHSVKEHTH 644
W D + + WDLRT KK++S+ EH H
Sbjct: 176 WDPHDVNAVAATGESSVQFWDLRTMKKVNSI-EHAH 210
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 555 TIITGHEAGDLIQWDLRTGKKI 620
TI+TG G L QWD+ G+++
Sbjct: 269 TIVTGSTDGSLKQWDIDNGRRV 290
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 256 DWQSINLITGGG-DSSCRLWDLETGKNIATLK 348
+W++ N++ G D ++WD+ TGK T++
Sbjct: 223 NWENRNIVASGSEDKKVKVWDVATGKCKVTME 254
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 516 SKVTSMIWGSLDETIITGHEAGD---LIQWDLRTGKKIHSVKEHTHQ 647
S + + W +E I AGD L+ WDLRT + H VK H +
Sbjct: 219 SIIEDVAWHMKNENIFGS--AGDDCQLVIWDLRTNQMQHQVKVHERE 263
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGER----LGTF----NGHGGVIW 244
+L GH + + ++ D+LFS + D+ +W S + + + T NGH +W
Sbjct: 134 VLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQTLSELNNGHSSTVW 193
Query: 245 CL--DATGSQLIS 277
+ +A G ++++
Sbjct: 194 SISFNAAGDKMVT 206
>At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repeat
(PF00400); 42% similarity to fimbriae-associated protein
Fap1 (gi:3929312) [Streptococcus parasanguinis]
Length = 994
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +3
Query: 510 TDSKVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKEHT 641
+ S VTS+ + + ++ G+ G + WD++ + EHT
Sbjct: 477 SQSPVTSVCFNQIGSLLLAGYGDGHVTVWDMQRASIAKVITEHT 520
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNG 202
L+GHQ+ +T + ++ ++L S+ DS+ V WS++G
Sbjct: 925 LKGHQKRVTGLAFSNVLNVLVSSGADSQLCV-WSMDG 960
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNG 202
L+GHQ+ +T + ++ ++L S+ DS+ V WS++G
Sbjct: 925 LKGHQKRVTGLAFSNVLNVLVSSGADSQLCV-WSMDG 960
>At3g02740.1 68416.m00266 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 488
Score = 28.7 bits (61), Expect = 3.5
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Frame = +1
Query: 40 IYNKLLNKILSKHE--TSYAARAP-AC-HHTDQI*PRGXXXXXXXXXFKTKCLVVTERRT 207
+YN LLN+IL+ H T + + C H+TD++ K+ L V R
Sbjct: 328 VYNPLLNEILASHPELTLHTVQESFTCFHYTDKL---DRFPTVTFQFDKSVSLAVYPREY 384
Query: 208 SWHFQRPRWCNMVP*RDWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSV 363
+ + WC WQ+ L T GG S L D+ + + V
Sbjct: 385 LFQVREDTWC-----FGWQNGGLQTKGGASLTILGDMALSNKLVVYDIENQV 431
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
+Q HQ I +K++ + LL SA +D +VW
Sbjct: 407 IQAHQGGIWTMKFSPDSHLLASAGEDCAIHVW 438
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = +2
Query: 89 MLQGHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
+L+GH+ ++ + ++ LLF+ + D + +W
Sbjct: 12 VLRGHRHSVMDVSFHPSKSLLFTGSADGELRIW 44
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 558 IITGHEAGDLIQWDLRTGK-KIHSVKEHT 641
++ G+E G ++ WD+R K + SVK H+
Sbjct: 234 VLAGYEDGSILLWDIRNAKIPLTSVKFHS 262
>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
family protein contains 1 WD-40 repeat (PF00400);
similar to anaphase-promoting complex subunit 4
GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
Length = 510
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 522 VTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHSVKEH 638
VTS+ W + I G E G + D+ GK + ++K H
Sbjct: 67 VTSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRNLKPH 105
>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 272
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 262 QSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNF 378
QS NL+ DS RL+D+E+ L S +++ C F
Sbjct: 24 QSNNLLVASWDSYLRLYDVESSSLSLELNSQAALLDCCF 62
>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 314
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 262 QSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNF 378
QS NL+ DS RL+D+E+ L S +++ C F
Sbjct: 24 QSNNLLVASWDSYLRLYDVESSSLSLELNSQAALLDCCF 62
>At1g29320.1 68414.m03584 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to meiotic recombination protein REC14
(GI:11139242) [Homo sapiens]; similar to unknown protein
GI:13623493 [Homo sapiens]
Length = 468
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 513 DSKVTSMIWGSLDETIITGHEAGDLIQWDLRTGKKIHS 626
++ +TS+ TI G+ + DL +D+RTGK + S
Sbjct: 259 ETAITSIAEDPDGHTIYVGNASADLASFDIRTGKLLGS 296
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKN 333
L++ G S RLWD+E+G+N
Sbjct: 327 LLSAGSYSRIRLWDIESGRN 346
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 95 QGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVI 241
+GH+ IT + + + SA+ D VW +G + GH G +
Sbjct: 284 RGHEGDITDLAVSSNNIFIASASNDCVIRVWRLPDGLPVSVLRGHTGAV 332
>At5g23070.1 68418.m02697 thymidine kinase, putative similar to
thymidine kinase [Oryza sativa] SWISS-PROT:O81263
Length = 282
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 307 LWDLETGKNIATLKSNSSVRTCNFS 381
L + ETGK IA +KSN R C S
Sbjct: 99 LAERETGKRIAIIKSNKDTRYCTES 123
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSSVRTC 372
+++G GD + W++E +A ++N V +C
Sbjct: 259 VLSGSGDGTLHAWNIENPSEVARWENNIGVVSC 291
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 92 LQGHQRAITQIKYNREG-DLLFSAAKDSKPNVWWSLNGER--LGTFNGHGG 235
+ GH A T + YN +LL + +KD +W N E + T N + G
Sbjct: 365 INGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNEPSCIATHNPNAG 415
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +2
Query: 101 HQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVI--WCLDATGSQLI 274
H AI I + + L +A+ D VW + G GH G + C T S L+
Sbjct: 127 HYNAIFDISWIKGDSCLLTASGDQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLL 186
Query: 275 SS 280
S
Sbjct: 187 VS 188
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNS 357
LITG D + ++WD +T + TL+ ++
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLEGHT 229
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNS 357
LITG D + ++WD +T + TL+ ++
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLEGHT 229
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 280 TGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSY 384
T GD S RLWD +GK T + S N +Y
Sbjct: 84 TASGDKSVRLWDARSGK--CTQQVELSGENINITY 116
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 101 HQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTF-NGHGGVI 241
H A++ + +R+G LL+S + D +W + + + L +F N H I
Sbjct: 164 HVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAI 211
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNIATLKSNSSVRT 369
L +G D + ++WDL T + I TLK ++ T
Sbjct: 271 LYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVT 302
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 110 AITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGT 217
A+ +K+N ++ S +D K ++ W NG+ LGT
Sbjct: 45 AVNSVKWNHTNLVVASTGEDKKISL-WRKNGQSLGT 79
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 274 LITGGGDSSCRLWDLETGKNI 336
LI+G D + R+WDLE+G I
Sbjct: 552 LISGSMDCTIRIWDLESGNVI 572
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 98 GHQRAITQIKYNREGDLLFSAAKDSKPNVW 187
GH R++T + ++ + LL S ++D VW
Sbjct: 118 GHYRSVTCLVFSGDDSLLVSGSQDGSIRVW 147
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 277 ITGGGDSSCRLWDLETGKNIATLKS 351
+T G D + + WD ETG+ I+T +
Sbjct: 342 LTAGYDKNIKYWDTETGQVISTFST 366
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,297,264
Number of Sequences: 28952
Number of extensions: 327358
Number of successful extensions: 1464
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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