Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060702.seq
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    29   0.56 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   1.7  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   2.3  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    27   3.0  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   5.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.2  

>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 301 N*PDKSLHQLRTAMHHTHRIKKELL 227
           N P  S+HQLR A++H+  + KE+L
Sbjct: 498 NSPLSSVHQLREALNHSSSVTKEVL 522


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 280 GAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 387
           G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 56  GEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 190 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 56
           FPVL QI+P  P L +  R F+  S+    SP++ +    R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = -2

Query: 242 QERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEA 63
           +   V L  LP+ G      VES     + P  ALP  PLSFS     P ++     PE+
Sbjct: 398 ENELVKLFFLPLDGD-----VESPHPTSTMPE-ALPREPLSFSLPEKAPEKATNISIPES 451

Query: 62  A 60
           A
Sbjct: 452 A 452


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 224 LSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATIL 99
           +SIL V+GP +  R+  +   G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = -2

Query: 281 PPTKNGH-APHPPNQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFAT 105
           PP   G  AP  P    A   S  PV  P  +       A  S P  A PS+P+    A 
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPS----APPSLPPSAPPSLPMGAPAAP 447

Query: 104 ILPPESKI 81
            LPP + I
Sbjct: 448 PLPPSAPI 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,679
Number of Sequences: 5004
Number of extensions: 53063
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)