Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060702.seq
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0130 - 963856-965454 29 2.3
03_06_0189 + 32214702-32215154 29 2.3
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 29 2.3
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 25 4.6
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217... 28 5.4
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 28 5.4
01_01_0595 - 4430738-4430785,4430904-4432679 28 7.1
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 27 9.4
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 27 9.4
02_05_0841 + 32129863-32130294,32130395-32130459,32130565-321307... 27 9.4
02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410... 27 9.4
>07_01_0130 - 963856-965454
Length = 532
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 257 PHPPNQERAVNLSILPVSGPGEISR 183
P PPN NL +LP+ GP ++ +
Sbjct: 203 PEPPNTLSVDNLGVLPIIGPAKVGK 227
>03_06_0189 + 32214702-32215154
Length = 150
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 167 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 60
AA + P ALP +P + T LPP I P+AA
Sbjct: 30 AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 526 PGQPAETPSCWGLGFAXIPHKRGIPSKR 609
PG+P +TP W + + +P + +P+KR
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKR 470
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 24.6 bits (51), Expect(2) = 4.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 262 WPFLVGGAICLVNSGNERDS 321
WP L AI V SGN R S
Sbjct: 235 WPELASSAIDYVQSGNRRPS 254
Score = 22.2 bits (45), Expect(2) = 4.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 184 REISPGPDTGRIDRLTALS*FGGCGAW 264
RE++PGP+T D L+ CGA+
Sbjct: 173 REVAPGPETVERDPRRCLN----CGAY 195
>02_04_0451 +
23021139-23021269,23021366-23021498,23021594-23021789,
23023376-23023737,23024049-23024363
Length = 378
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 251 PPNQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSF 111
PP + N +ILP PG S + S G TP G + P F F
Sbjct: 327 PPRTFSSEN-AILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 281 PPTKNGHAPHPPNQER 234
PP G APHPP Q+R
Sbjct: 92 PPAAAGAAPHPPQQQR 107
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = -2
Query: 281 PPTKNGHAPHPPNQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATI 102
P K HAP PP ++ P RV + AA +T A P +P T+
Sbjct: 148 PVRKRVHAPQPPPAPAPEKAAVSPSIPVPAKKRVSATAAAAAT--DASPRVPFKDLVNTL 205
Query: 101 LPP 93
PP
Sbjct: 206 PPP 208
>09_06_0076 + 20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -1
Query: 186 PC*VKLSRRLHSWWCPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSNVGGSL 25
PC L R S W V++ Q C + P + +P PP S VGG L
Sbjct: 936 PCKTSLPRESASAWWTQVDTVSGQGCGESSPLCRPPAYPPE-PPVVLSLVGGQL 988
>08_01_0004 +
39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 284 APPTKNGHAPHPPNQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALP 135
AP G+ P + + LP+ G + ++N A G+TPG LP
Sbjct: 570 APKFTMGNCPSESGRSTNCTVGALPLQKRGLGTSHQTNDAIGTTPGPLLP 619
>02_05_0841 +
32129863-32130294,32130395-32130459,32130565-32130774,
32130943-32131024
Length = 262
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -2
Query: 200 PGEISRVESN*AAGSTPGGALPS-IPLSFSFAT--ILPPESKIFGFPEAARRA 51
PGE+S +ES+ A G LPS S AT +PP ++I F AA A
Sbjct: 176 PGEVSDLESDLAGGQKRSRPLPSAATASAQQATRPKIPPAAEIEAFFAAAEEA 228
>02_05_0076 +
25637752-25639062,25639221-25639297,25640962-25641095,
25641178-25641242,25641431-25641482,25641912-25641994,
25642128-25642221,25642332-25642861
Length = 781
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -2
Query: 257 PHPPNQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATILPPES 87
P P + R L ++ +SG ++R E +A G LPS P++ S ++ P S
Sbjct: 66 PAPIQERRRRLLQLMGLSGDPSLARFERGRSAPCDAVGPLPSSPVARSRSSGATPAS 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,395,909
Number of Sequences: 37544
Number of extensions: 461427
Number of successful extensions: 1177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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