Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060702.seq
         (636 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128431-1|BAC87437.1|  134|Homo sapiens protein ( Homo sapiens ...    31   4.5  
X52003-1|CAA36254.1|   84|Homo sapiens pS2 protein protein.            30   7.9  
X05030-1|CAA28695.1|   84|Homo sapiens pS2 protein.                    30   7.9  
X00474-1|CAA25155.1|   84|Homo sapiens protein ( Human pS2 mRNA ...    30   7.9  
M12075-1|AAA52402.1|   83|Homo sapiens ESR protein.                    30   7.9  
BC032811-1|AAH32811.1|   84|Homo sapiens trefoil factor 1 protein.     30   7.9  
AP001746-3|BAA95532.1|   84|Homo sapiens trefoil factor, BCE1 pr...    30   7.9  
AB038162-1|BAB13729.1|   84|Homo sapiens trefoil factor 1 protein.     30   7.9  

>AK128431-1|BAC87437.1|  134|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46574 fis, clone THYMU3041736. ).
          Length = 134

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 543 FSGLPGPLGQGDMLIPSV*RACGPGHLRASQTCYCSISCGSKTPVP 406
           + G P PLGQ   L   + R C P    +S   + S+ C +  P P
Sbjct: 2   YCGSPWPLGQSSRLQDCLQRPCLPAARESSSAIHLSLICHTPQPWP 47


>X52003-1|CAA36254.1|   84|Homo sapiens pS2 protein protein.
          Length = 84

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 117 QLCNHTPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTLVP 1
           + C   P   QN  FPG   PS C+N G   DD    VP
Sbjct: 29  ETCTVAPRERQNCGFPG-VTPSQCANKGCCFDDTVRGVP 66


>X05030-1|CAA28695.1|   84|Homo sapiens pS2 protein.
          Length = 84

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 117 QLCNHTPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTLVP 1
           + C   P   QN  FPG   PS C+N G   DD    VP
Sbjct: 29  ETCTVAPRERQNCGFPG-VTPSQCANKGCCFDDTVRGVP 66


>X00474-1|CAA25155.1|   84|Homo sapiens protein ( Human pS2 mRNA
           induced by estrogen from human breast cancer cell  line 
           ).
          Length = 84

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 117 QLCNHTPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTLVP 1
           + C   P   QN  FPG   PS C+N G   DD    VP
Sbjct: 29  ETCTVAPRERQNCGFPG-VTPSQCANKGCCFDDTVRGVP 66


>M12075-1|AAA52402.1|   83|Homo sapiens ESR protein.
          Length = 83

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 117 QLCNHTPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTLVP 1
           + C   P   QN  FPG   PS C+N G   DD    VP
Sbjct: 28  ETCTVAPRERQNCGFPG-VTPSQCANKGCCFDDTVRGVP 65


>BC032811-1|AAH32811.1|   84|Homo sapiens trefoil factor 1 protein.
          Length = 84

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 117 QLCNHTPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTLVP 1
           + C   P   QN  FPG   PS C+N G   DD    VP
Sbjct: 29  ETCTVAPRERQNCGFPG-VTPSQCANKGCCFDDTVRGVP 66


>AP001746-3|BAA95532.1|   84|Homo sapiens trefoil factor, BCE1
           protein.
          Length = 84

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 117 QLCNHTPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTLVP 1
           + C   P   QN  FPG   PS C+N G   DD    VP
Sbjct: 29  ETCTVAPRERQNCGFPG-VTPSQCANKGCCFDDTVRGVP 66


>AB038162-1|BAB13729.1|   84|Homo sapiens trefoil factor 1 protein.
          Length = 84

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 117 QLCNHTPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTLVP 1
           + C   P   QN  FPG   PS C+N G   DD    VP
Sbjct: 29  ETCTVAPRERQNCGFPG-VTPSQCANKGCCFDDTVRGVP 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,348,909
Number of Sequences: 237096
Number of extensions: 2601705
Number of successful extensions: 6620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6620
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)