Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060702.seq
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   0.52 
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    30   1.2  
U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        28   6.4  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        28   6.4  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    28   6.4  
AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical...    28   6.4  
Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical p...    27   8.5  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    27   8.5  
AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor tyro...    27   8.5  
AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor tyro...    27   8.5  
AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical...    27   8.5  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 144 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTLVP 1
           CP  ++F F  C     G++  +FPG+CP   CS+   ++ +    VP
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSSQDVNISETCGEVP 245


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 233 AVNLSILPVSGPGEISRVESN*AAGSTPGG-ALPSIPLSFSFATILPPESKIFGFPEAAR 57
           A N S+   S P  + R  S  +  +TP G A P  PLS S +    P+S   G P + +
Sbjct: 513 ATNTSVSS-STPRSVVRTTSTSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTPLSRK 571

Query: 56  RAI 48
           R++
Sbjct: 572 RSM 574


>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 149 QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 244
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 281 PPTKNGHAPHPPNQERAVNLSILPVSG--PGEISRVE 177
           PP+  G AP PP  +  VN ++  + G  PG + R E
Sbjct: 119 PPSGLGVAPQPPRPKTPVNPALAKLGGKNPGTVDRGE 155


>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 281 PPTKNGHAPHPPNQERAVNLSILP-VSGP 198
           PPTK G  P+P N     N S+ P +S P
Sbjct: 276 PPTKKGMKPNPLNLTATSNFSLQPSISSP 304


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 281 PPTKNGHAPHPPNQERAVNLSILP-VSGP 198
           PPTK G  P+P N     N S+ P +S P
Sbjct: 276 PPTKKGMKPNPLNLTATSNFSLQPSISSP 304


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 281 PPTKNGHAPHPPNQERAVNLSILP-VSGP 198
           PPTK G  P+P N     N S+ P +S P
Sbjct: 276 PPTKKGMKPNPLNLTATSNFSLQPSISSP 304


>AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical
           protein Y73B3A.5 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 281 PPTKNGHAPHPPNQERAVNLSILP-VSGP 198
           PPTK G  P+P N     N S+ P +S P
Sbjct: 178 PPTKKGMKPNPLNLTATSNFSLQPSISSP 206


>Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 67  SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 204
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 67  SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 204
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 67  SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 204
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 67  SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 204
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical
           protein C01G6.8c protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 67  SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 204
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 348 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 397


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 HQEWSLRLNLTQHGKSHQARTP 211
           H +W ++ NL +HG ++ A  P
Sbjct: 696 HMDWHVKQNLARHGSNNSAAVP 717


>AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 67  SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 204
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 67  SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 204
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical
           protein Y47G6A.3 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 157 EPAA*FDSTREISPGPDTGRIDRL 228
           EP+A FD+  ++ PG    RIDR+
Sbjct: 100 EPSALFDNANDLLPGQKEERIDRM 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,404
Number of Sequences: 27780
Number of extensions: 340126
Number of successful extensions: 914
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)