Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060701.seq
         (601 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6DB20 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  
UniRef50_Q1VZW9 Cluster: ATP-dependent exonuclease SbcC; n=1; Ps...    33   5.1  

>UniRef50_A6DB20 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 323

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 185 ILIEY*YKNHIFKIYEQFFSLTSQILYEYVDVDNITSFDLRRNCDPDYKRPL 30
           I +E   +   +KIY  F++L+ + + EY+   NI  F  + N D  YKR L
Sbjct: 120 IAMEKWEEREFYKIYRPFYNLSRREIIEYLHKHNIKYFIDKSNFDIKYKRNL 171


>UniRef50_Q1VZW9 Cluster: ATP-dependent exonuclease SbcC; n=1;
           Psychroflexus torquis ATCC 700755|Rep: ATP-dependent
           exonuclease SbcC - Psychroflexus torquis ATCC 700755
          Length = 1007

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 149 KIYEQFFSLTSQILYEYVDVDNITSFDLRRNCDPDYKRPLTHMHHKSS 6
           K+YE++ SL S+IL +   +DN+    + +  + D+K  L  +  K +
Sbjct: 189 KVYEKYMSLKSKILTQKTILDNLQDKLISKETESDFKENLNQLKEKET 236


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,203,289
Number of Sequences: 1657284
Number of extensions: 10198574
Number of successful extensions: 20324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20320
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)