Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060701.seq
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    27   2.1  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    25   8.5  

>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 45  IRITVPTEVETGNIINIHIFIQNLAR 122
           I I +P E+   N+  IH F+  L R
Sbjct: 371 IEIEMPVEISNSNVTKIHKFLDTLGR 396


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 396 HLRFYSYDFFYHPYAVQNIKSIERH 322
           +L+F  +DF+  P  ++ I++IE+H
Sbjct: 93  NLKFIEFDFY--PNCIRKIRTIEKH 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,686
Number of Sequences: 5004
Number of extensions: 49250
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)