Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060701.seq
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0281 + 2160480-2162003                                           29   2.2  
05_03_0042 - 7675244-7675846,7675946-7676101,7676444-7676511,768...    27   8.7  

>03_01_0281 + 2160480-2162003
          Length = 507

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 125 LTSQILYEYVDVDNITSFDLRRNCDPDYKRPLTHMH 18
           + S+IL E   V+ IT+ D     DPD  RPL ++H
Sbjct: 326 VVSKILEELDSVNGITTPDGMVTFDPDELRPLVYLH 361


>05_03_0042 -
           7675244-7675846,7675946-7676101,7676444-7676511,
           7680128-7680383
          Length = 360

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 125 LTSQILYEYVDVDNITSFDLRRNCDPD 45
           +T+Q+L    DV+ I  F +  N DPD
Sbjct: 113 VTTQLLLTLFDVEGIVHFGIAGNADPD 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,574
Number of Sequences: 37544
Number of extensions: 243452
Number of successful extensions: 341
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)