Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060701.seq
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)                   28   5.0  
SB_21016| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_17954| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
          Length = 671

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -3

Query: 161 NHIFKIYEQFFSLTSQILYEYV--DVDNITS----FDLRRNCDPDYKRPLTHM 21
           NH+ +      S+T  I+YE V  D DN T     +DL R+C       L+HM
Sbjct: 352 NHLEQSARHLESMTDPIIYELVEADEDNDTHYSRLYDLSRSCPVRINALLSHM 404


>SB_21016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +2

Query: 470 IFMHQINIYIXHIVDKCILIKKLWSYCDIQISXLI---NIHRDTARC 601
           + + ++++Y  H +  C+LI ++  Y D+Q+  LI   +I+RD   C
Sbjct: 88  VLITEVSLY--HDLPACVLITEVSIYRDLQVCVLITEVSIYRDLRAC 132


>SB_17954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 496 ININLMHENIXAVFFFLIHKHKTTVTSLITIAISFEILFL 377
           ININ +  N+     F++  H T + S   +  SFE L++
Sbjct: 151 ININAIPNNMEKYMAFMLGNHLTFIDSFQVMNSSFEKLYI 190


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 104 EYVDVDNITSFDLRRNCDPDYKRPLTHMH 18
           E V  D+   F L   CDPD+K    H H
Sbjct: 471 ESVVADHCRKFALSDPCDPDFKSVCDHYH 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,082,777
Number of Sequences: 59808
Number of extensions: 323469
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)