Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060701.seq
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    28   4.4  

>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = -2

Query: 561 ICISQ*LHSFFIKMHLSTIWXI*ILI*CMKIXVLFFFF*YINTKLLLHH*SPLQFHLRFY 382
           +C S  L++ F    +  IW    ++  ++  +L +      T  ++HH   L F   FY
Sbjct: 223 VCHSGTLYTGFFSGSVVAIWTFTKVVDLLETMLLLYDARRPLTIHIIHHFLSLSFAFTFY 282

Query: 381 SYDFFYHPYAV 349
           S +F  H + V
Sbjct: 283 SQNFALHRWIV 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,414,828
Number of Sequences: 27780
Number of extensions: 266727
Number of successful extensions: 553
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)