Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060701.seq
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -1

Query: 499 DININLMHENIXAVFFFLIHKHKTTVTSLITIAISFEILFLR 374
           + N+NL+        F  +H     V  +I I   F + FLR
Sbjct: 33  EANVNLLKNRTGRYMFTYLHLLYQDVHVMIWIGFGFLMTFLR 74


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 60  PTEVETGNIINIHIFIQNL 116
           PT+  T  ++  H+F+ NL
Sbjct: 906 PTKRRTMKVVKYHLFLTNL 924


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 60   PTEVETGNIINIHIFIQNL 116
            PT+  T  ++  H+F+ NL
Sbjct: 944  PTKRRTMKVVKYHLFLTNL 962


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 406 IAISFEILFLRFLLSSIRGTE 344
           I + F ILF   LLSSIR  E
Sbjct: 231 IPLIFIILFYSRLLSSIRNHE 251


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 406 IAISFEILFLRFLLSSIRGTE 344
           I + F ILF   LLSSIR  E
Sbjct: 231 IPLIFIILFYSRLLSSIRNHE 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,200
Number of Sequences: 438
Number of extensions: 3450
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)