Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060701.seq
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00...    28   5.4  
At5g17500.1 68418.m02053 glycosyl hydrolase family 5 protein / c...    28   5.4  

>At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 566

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 511 YNMXDININLMHENIXAVFFFLIHKHKTTVT 419
           YN   + IN M EN+   FFF +H+    VT
Sbjct: 280 YNPMQVKINEMLENLDDDFFFELHEDLIEVT 310


>At5g17500.1 68418.m02053 glycosyl hydrolase family 5 protein /
           cellulase family protein predicted protein F3F19.15 -
           Arabidopsis thaliana, EMBL:AC007357
          Length = 526

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 135 LFVNLKNVVFISIFNQYRAVNATFK 209
           +F+N+KNVV +S+ N+ R  N T K
Sbjct: 190 IFMNVKNVVGMSLRNELRGYNHTSK 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,562
Number of Sequences: 28952
Number of extensions: 226691
Number of successful extensions: 406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)