Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060700.seq
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    27   2.3  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   3.0  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    26   5.2  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   5.2  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   6.9  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   6.9  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    25   9.1  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.1  

>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 322 PNVRNCGSSRTEQYYYRNDKPSVGK 248
           P V N GSSRT+ +Y R    + GK
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAGK 110


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 185 WIVHPSKGNVSWV*TVVRQVSFTH*WLVVAIVILLSTRGTAVSDIWFMHS 334
           W+     G++    T  RQ++FT  W+ +  + ++   G + S +W  HS
Sbjct: 181 WMFSLLVGSLVVYFTAWRQITFT--WITLMFISMIIPIGISFSKLWKKHS 228


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 495 FKTRERXSKPIWIAEIDAIGFFLN 566
           ++T+E+ +  IW+  I  +G++ N
Sbjct: 236 YETQEQITASIWVEHISKLGYYFN 259


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 97  CGSQAFIATLLFDPSMSALPIIAXKIRQAL 186
           CGS   I  +LF  S S L   + KI Q L
Sbjct: 511 CGSSPAIKLILFSKSFSVLQSTSEKIEQLL 540


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 180 LANFXRNDRKSRH-RRIKKQRRYERLAAT 97
           LANF R DR+S H    +K++ Y ++A++
Sbjct: 696 LANFIRYDRESVHIPEFQKRKSYSQVASS 724


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 587  LRSRDARVKKKTDS-IDLRDPNGLRRSLSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 411
            LR    + +  +D+ ID  + N ++RSL ++E + +++KS      + +   ++  + D 
Sbjct: 827  LRRNPLKAEIGSDNRIDESELNSVKRSLLKYENKLQIIKSSS-SGLEEQMQRINSEISDK 885

Query: 410  ARLASALEAFRHNPA 366
                 +LE  +H  A
Sbjct: 886  RNELESLEELQHEVA 900


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 501 TRERXSKPIWIAEIDAIGFFLNTCITAPKS 590
           T  +   P W+AE+ AI  F++  + AP S
Sbjct: 36  TGSKVELPFWLAEVLAINSFVSIHMPAPFS 65


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +3

Query: 528 WIAEIDAIGFFLNTCITAPKSGYNSVRCRG 617
           W++++ A+    N+ ++ PKS ++ ++ RG
Sbjct: 104 WLSKLTALSKSTNSTLSTPKSFHSPLQSRG 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,473
Number of Sequences: 5004
Number of extensions: 45119
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)