Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060700.seq
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0183 - 21681673-21682524                                         31   0.58 
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   3.1  
10_08_0996 - 22112020-22112859                                         29   4.1  
08_02_0744 - 20659326-20659580,20659748-20660005,20660103-206615...    28   5.4  
06_01_0655 + 4742267-4742531,4743313-4744136                           28   7.1  
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    28   7.1  
07_03_0846 - 21983581-21986055                                         27   9.4  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   9.4  

>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 103 SQAFIATLLFDPSMSALPIIAXKIRQALDCSPIKRERELGLDRRETG 243
           SQAF A LL D + +A+P++  + R A + +  + E E    RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPE-TETETEEEPPRQRRRTG 274


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 42  YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 149
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>10_08_0996 - 22112020-22112859
          Length = 279

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 103 SQAFIATLLFDPSMSALPIIAXKIRQALDCSPIKRERELGLDRRETG 243
           +QAF A LL D + +A P++  + R A + +  + E E    RR TG
Sbjct: 225 AQAFSAVLLADANRTASPVVVVQKRAAPE-TETETEEEPPRQRRRTG 270


>08_02_0744 -
           20659326-20659580,20659748-20660005,20660103-20661575,
           20661677-20661835,20661948-20662074,20662155-20662486,
           20662574-20663383,20663772-20664110,20664187-20664340,
           20664427-20665143,20665699-20665967
          Length = 1630

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 554 TDSIDLRDPNGLRRSL--SRFECETRLVKSHCLEPPDSRGSTVSI-SLPDSARL 402
           TDS+ +  PNG+ RSL  S  E  T +V  +   P   R   +S+ SL    RL
Sbjct: 118 TDSLSVSTPNGVARSLTPSPLESPTWMVGHNDASPTSKRNERLSLDSLGCDTRL 171


>06_01_0655 + 4742267-4742531,4743313-4744136
          Length = 362

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 542 DLRDPN-GLRRSLSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLAS 396
           ++RDP  G+R  L  F       +++  E    RG    ++ PD A +AS
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS 178


>01_07_0124 +
           41212728-41212922,41215156-41215210,41215336-41217128,
           41217363-41217521,41217883-41218054,41218173-41218471,
           41219060-41219368
          Length = 993

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -2

Query: 560 KKTDSIDLRDPNGLRRSLSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 381
           KKT ++ +  P+   R  +  +  + +V S C    D  G+   ++   + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 542 DLRD-PNGLRRSLSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 393
           DL+D   G +R++   +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVP-LQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 412 RLGWLRP*RRSGIIP 368
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,382,291
Number of Sequences: 37544
Number of extensions: 318245
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)