Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060700.seq
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26190.1 68417.m03770 expressed protein                             31   0.85 
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c...    28   6.0  
At2g26410.1 68415.m03169 calmodulin-binding family protein simil...    27   7.9  

>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 495  FKTRERXSKPIWIAEIDAIGFFLNTCITAPKSGYN 599
            FKT+E+  KP+++ ++  +   + TCI+  K  Y+
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGKRKYD 978


>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 673

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 322 PNVRNCGSSRTEQYYYRNDKPSVGKTNLSH 233
           P +R   S+   +YY++ D P+ G +NL +
Sbjct: 439 PVLRQLESAAMREYYFKADHPTSGSSNLKY 468


>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 516

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +2

Query: 332 SAERPVVRXXHPRDYA*TPLRPKPA*PNPARICSLWS---PESREALNNVTLLVAFRIQN 502
           S  RP        D+A  PL P P+ P P    ++ +    ES+E+ N   L +A  +  
Sbjct: 48  SVHRPYPPPPPLPDFAPQPLLPPPSPPPPPPAYTINTRIYGESKESKNRQALALASAVAA 107

Query: 503 ARAXVEAH 526
             A V AH
Sbjct: 108 EAAVVAAH 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,679
Number of Sequences: 28952
Number of extensions: 246197
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)