Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060696.seq
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 69 7e-13
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 61 1e-10
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 56 3e-09
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 50 4e-07
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 48 1e-06
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 46 3e-06
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 44 2e-05
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 42 5e-05
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 40 4e-04
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 37 0.003
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 35 0.008
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 33 0.025
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 2.9
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 26 5.0
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 26 5.0
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 6.6
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 25 8.8
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 68.5 bits (160), Expect = 7e-13
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +2
Query: 14 LEIHTRTHTGERPFECDV--CYKRFTQKSTLNIHKRIHTGERPYAC--DICQKRFAVKSY 181
LE H RTH+ ERPF CD C K F +KS L IHKR HT +P++C D C +F + +
Sbjct: 40 LEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQH 99
Query: 182 VTAHRWSHVADKPLNC 229
+ H H KP C
Sbjct: 100 LERHIEVHRKPKPYAC 115
Score = 53.2 bits (122), Expect = 3e-08
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Frame = +2
Query: 14 LEIHTRT-HTGERPFEC--DVCYKRFTQKSTLNIHKRIHTGERPYACDI--CQKRFAVKS 178
+EI ++ + ++ F C + C K++++ S L H R H+ ERP+ CD C K F KS
Sbjct: 9 IEIESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKS 68
Query: 179 YVTAHRWSHVADKPLNC 229
++ H+ H KP +C
Sbjct: 69 HLKIHKRCHTNVKPFSC 85
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +2
Query: 11 YLEIHTRTHTGERPFEC--DVCYKRFTQKSTLNIHKRIHTGERPYAC--DICQKRFAVKS 178
+L+IH R HT +PF C D C +F + L H +H +PYAC + C + F+
Sbjct: 69 HLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQ 128
Query: 179 YVTAH 193
+ +H
Sbjct: 129 QLRSH 133
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 11 YLEIHTRTHTGERPFECDV--CYKRFTQKSTLNIH-KRIHTGERPYACDICQKRFAVKSY 181
++ +H T + + C + C K FT+ S L H IH G + CD C +F K
Sbjct: 222 HVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHM 281
Query: 182 VTAH 193
+ H
Sbjct: 282 LQRH 285
Score = 29.1 bits (62), Expect = 0.54
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 259 SQFALHIRTHAAGSCYECSVCGRSFVRDSYLIRHHNRVHR 378
SQ HIR SC S+CGR F ++L RHH +H+
Sbjct: 192 SQLQNHIREAHVPSC---SICGRQFKTAAHL-RHHVVLHQ 227
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 61.3 bits (142), Expect = 1e-10
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +2
Query: 14 LEIHTRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAH 193
L+ H THT RPF+C +C K F ++ H+++HTG + +AC C +RFA + H
Sbjct: 587 LKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRH 646
Query: 194 RWSHVADKPL 223
S V L
Sbjct: 647 YKSEVGQNCL 656
Score = 48.8 bits (111), Expect = 6e-07
Identities = 22/57 (38%), Positives = 26/57 (45%)
Frame = +2
Query: 68 CYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRC 238
C KRFT+ L H HT RP+ C IC+K FA + H H K C C
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTC 633
Score = 31.5 bits (68), Expect = 0.10
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 274 HIRTHAAGSCYECSVCGRSFVRDSYLIRHHNRVHRDNHSNMSA 402
H+ TH ++CS+C +SF R +H R H H+ + A
Sbjct: 590 HMNTHTNYRPFQCSICKKSFAR-----QHDKRRHEQLHTGIKA 627
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 56.4 bits (130), Expect = 3e-09
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +2
Query: 14 LEIHTRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAH 193
+E H +TH +RP+ CD+C F + L H RIH RPY C+ C KRF + H
Sbjct: 460 VESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLKRFNRLDALNRH 518
Query: 194 RWSHV 208
+ ++
Sbjct: 519 KQRNI 523
Score = 41.5 bits (93), Expect = 9e-05
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 68 CYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCD 232
C KR +K + H + H +RPY CD+C+ F + H H +P C+
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE 504
Score = 34.3 bits (75), Expect = 0.014
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 152 CQKRFAVKSYVTAHRWSHVADKPLNCDRC 238
C KR A K V +H +H++D+P CD C
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLC 478
Score = 32.7 bits (71), Expect = 0.044
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 274 HIRTHAAGSCYECSVCGRSFVRDSYLIRHHNRVHRD 381
HI+TH + Y C +C FVR + ++ H R+H +
Sbjct: 463 HIQTHLSDRPYRCDLCKAGFVR-HHDLKRHLRIHEN 497
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 49.6 bits (113), Expect = 4e-07
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 53 FECDVCYKRFTQKSTLNIHKRIHTGERPYACDI--CQKRFAVKSYVTAHRWSH 205
+ C C + F++ S+L IH HTGERP+ CD C K F V+S + H+ H
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 14 LEIHTRTHTGERPFECDV--CYKRFTQKSTLNIHKRIH 121
L+IHT +HTGERPF CD C K F +S + H+RIH
Sbjct: 483 LKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 30.3 bits (65), Expect = 0.23
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 137 YACDICQKRFAVKSYVTAHRWSHVADKPLNCD 232
Y C C + F+ S + H +SH ++P CD
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCD 499
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 26 TRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDI--CQKRFAVKSYVTAHRW 199
T+ RP++C +C K F + H R HTGE+P+ C C KRF+ +T H
Sbjct: 17 TKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHAR 76
Query: 200 SH 205
H
Sbjct: 77 IH 78
Score = 42.3 bits (95), Expect = 5e-05
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 23 HTRTHTGERPFECDV--CYKRFTQKSTLNIHKRIHT 124
H RTHTGE+P C C KRF++ L H RIHT
Sbjct: 44 HIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 32.7 bits (71), Expect = 0.044
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 131 RPYACDICQKRFAVKSYVTAHRWSHVADKPLNC 229
RPY C +C K F + T H +H +KP C
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVC 56
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 46.4 bits (105), Expect = 3e-06
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 41 GERPFECDVCYKRFTQKSTLNIHKR-IHTGERPYACDICQKRFAVKSYVTAHRWSHVADK 217
G + F C C K+F + L H R +HT E+P+ C IC KRF+ + + H HV
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLHVNAS 477
Query: 218 P 220
P
Sbjct: 478 P 478
Score = 42.3 bits (95), Expect = 5e-05
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 5 TRYLEIHTRT-HTGERPFECDVCYKRFTQKSTLNIHKRIHTGERP-YAC 145
+ +L H R+ HT E+PF C +C KRF+++ L H+R+H P AC
Sbjct: 435 SEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLHVNASPRLAC 482
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 23 HTRTHTGERPFECDV--CYKRFTQKSTLNIHKRIH 121
H R+HTGE+PFEC C KRFT++ L H R H
Sbjct: 22 HIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 47 RPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDI--CQKRFAVKSYVTAHRWSHV 208
+ +EC C + F ++ H R HTGE+P+ C C+KRF + + H +H+
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHL 57
Score = 30.3 bits (65), Expect = 0.23
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 250 HVKSQFALHIRTHAAGSCYECSV--CGRSFVRDSYLIRH 360
H + HIR+H +ECS C + F R LIRH
Sbjct: 14 HRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRH 52
Score = 29.1 bits (62), Expect = 0.54
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 131 RPYACDICQKRFAVKSYVTAHRWSHVADKPLNC 229
+ Y C C++ F + + H SH +KP C
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFEC 34
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 304 YECSVCGRSFVRDSYLIRH 360
YEC C R F R + +RH
Sbjct: 4 YECPFCKRVFHRQEHQVRH 22
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 44 ERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAH 193
+R F CD C KRFT+ L HK H+ P C C+ + K + H
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRH 77
Score = 33.5 bits (73), Expect = 0.025
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 128 ERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRC 238
+R + CD C KRF +T H+ H +P+ C C
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYC 64
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 14 LEIHTRTHT-GERPFECDV--CYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYV 184
L+ +R H G+ F C C K FT+K L H+R H + ++C C + FA +
Sbjct: 12 LKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVL 71
Query: 185 TAH 193
H
Sbjct: 72 NRH 74
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 256 KSQFALHIRTHAAGSCYECSVCGRSFVRDSYLIRHHNRVH 375
K H RTH + CS C R+F R L RH ++H
Sbjct: 40 KEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
Score = 32.3 bits (70), Expect = 0.058
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 11 YLEIHTRTHTGERPFECDVCYKRFTQKSTLNIH 109
+L H RTH + F C C + F + LN H
Sbjct: 42 HLRRHERTHENVKAFSCSFCNRAFARSDVLNRH 74
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 14 LEIHTRTHTGERPFECDV--CYKRFTQKSTLNIHKR-IHTGE 130
L H R+HTGE+PF C V C + FT+ L H R +H +
Sbjct: 93 LVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHEAD 134
Score = 35.1 bits (77), Expect = 0.008
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 259 SQFAL--HIRTHAAGSCYECSV--CGRSFVRDSYLIRHHNRVH 375
S+FAL H+R+H + CSV C RSF R L +H VH
Sbjct: 89 SRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
Score = 33.5 bits (73), Expect = 0.025
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 83 TQKSTLNIHKRIHTGERPYACDI--CQKRFAVKSYVTAH-RWSHVAD 214
T + L H R HTGE+P+ C + C + F + H R H AD
Sbjct: 88 TSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHEAD 134
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +2
Query: 41 GERPFECDV--CYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAH 193
G+ ++CD C K FT+K H R HT + + C C F + H
Sbjct: 13 GDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRH 65
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 23 HTRTHTGERPFECDVCYKRFTQKSTLNIH 109
H R+HT + F C C FT+ LN H
Sbjct: 37 HFRSHTNSKAFICPHCSSSFTRSDVLNRH 65
Score = 28.7 bits (61), Expect = 0.71
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Frame = +2
Query: 125 GERPYACDI--CQKRFAVKSYVTAHRWSHVADKPLNCDRC 238
G+ Y CD C K F K + H SH K C C
Sbjct: 13 GDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHC 52
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 33.5 bits (73), Expect = 0.025
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Frame = +1
Query: 274 HIRTHAAGSCYECSV-------CGRSFVRDSYLIRHHNRVHRD 381
HIR+H + CS CGR F R L+RH ++HR+
Sbjct: 88 HIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRN 130
Score = 33.1 bits (72), Expect = 0.033
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 47 RPFECDVCYKRFTQKSTLNIHKRIHTGERPYAC 145
+ + C+ C + F + L H R HT E+P+ C
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTC 100
Score = 31.5 bits (68), Expect = 0.10
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 131 RPYACDICQKRFAVKSYVTAHRWSHVADKPLNC 229
+ Y C+ C + FA ++ H SH +KP C
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTC 100
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Frame = +2
Query: 11 YLEIHTRTHTGERPFECDV-------CYKRFTQKSTLNIH-KRIHTGERP 136
+L+ H R+HT E+PF C C ++F+++ L H ++IH +P
Sbjct: 84 HLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRNPQP 133
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 107 HKRIHTGERPYACDICQKRFAVKSYVTAHR 196
H+ +PY C++C KR+ + + HR
Sbjct: 389 HQGFVVENKPYRCEVCSKRYKNLNGLKYHR 418
Score = 26.6 bits (56), Expect = 2.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 47 RPFECDVCYKRFTQKSTLNIHK 112
+P+ C+VC KR+ + L H+
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYHR 418
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 74 KRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADK 217
K F ++S N+ K +H G + +C+I + S +A +V DK
Sbjct: 7 KNFGRRSVYNLKKCLHKGFQINSCNIKAADNVLHSKASAFEKVNVVDK 54
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 2 GTRYLEIHTRTHTGERPFECDVCYKRFTQKSTLNIHKRIH 121
GT + + F CD C F ++S L HKR +
Sbjct: 122 GTSVANASKQPNMPNATFRCDKCDMMFVKQSGLTNHKRTY 161
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 63 TSVTNASHRNRRSTYTSAFIP 125
TS N SH STYTS ++P
Sbjct: 153 TSYNNQSHTLIYSTYTSTYLP 173
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/51 (21%), Positives = 23/51 (45%)
Frame = +1
Query: 340 DSYLIRHHNRVHRDNHSNMSANSIGINSVAXXXXXXXXXXYDSPGVCDLSF 492
D L+ + HR+NHS+ + ++ + +++P VC L +
Sbjct: 47 DHALVNNPPNTHRENHSSGTTDNSSPLLIKLLISFTSIILFNAPAVCYLKY 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,584
Number of Sequences: 5004
Number of extensions: 33756
Number of successful extensions: 151
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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