Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060694.seq
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   140   2e-34
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    90   3e-19
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    89   7e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    71   2e-13
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   2.3  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   3.0  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   4.0  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   4.0  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   5.2  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   6.9  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  140 bits (338), Expect = 2e-34
 Identities = 60/75 (80%), Positives = 69/75 (92%)
 Frame = +1

Query: 256 AILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
           A+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+
Sbjct: 63  AVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRR 122

Query: 436 EAESCDCLQGFQLTH 480
           EAE+CD LQGFQLTH
Sbjct: 123 EAEACDALQGFQLTH 137



 Score =  106 bits (254), Expect = 3e-24
 Identities = 44/60 (73%), Positives = 51/60 (85%)
 Frame = +2

Query: 71  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 250
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 33/42 (78%), Positives = 38/42 (90%)
 Frame = +3

Query: 510 GTLLIXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSV 635
           GTLL+ KIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+
Sbjct: 148 GTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSM 189


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 37/75 (49%), Positives = 54/75 (72%)
 Frame = +1

Query: 256 AILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
           +I VDLEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E++DSVL+ +R+
Sbjct: 69  SIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRR 128

Query: 436 EAESCDCLQGFQLTH 480
            A++C  LQGF + H
Sbjct: 129 MADNCSGLQGFLVFH 143



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%)
 Frame = +2

Query: 71  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG 238
           MRE++ +  GQ G QIG   WE+   EHGI P G    +S  ++ + N Y N+  G
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENS--EVHKNNSYLNDGFG 54



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = +3

Query: 510 GTLLIXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLS 632
           G LL+ ++  EY  +    +SV P+P+VS +VVEPYN+ L+
Sbjct: 154 GALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLT 194


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 88.6 bits (210), Expect = 7e-19
 Identities = 37/75 (49%), Positives = 52/75 (69%)
 Frame = +1

Query: 256 AILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
           +I VDLEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G ELVD V D +R+
Sbjct: 65  SIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRR 124

Query: 436 EAESCDCLQGFQLTH 480
            A++C  LQGF + H
Sbjct: 125 IADNCSGLQGFLVFH 139



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +2

Query: 71  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 244
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 245 YV 250
           YV
Sbjct: 61  YV 62



 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = +3

Query: 510 GTLLIXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLS 632
           G LL+ ++  EY  +    +SV P+P+VS +VVEPYN+ L+
Sbjct: 150 GALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLT 190


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
 Frame = +1

Query: 256 AILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVV 429
           AIL+DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+    + + ++D++
Sbjct: 64  AILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMI 122

Query: 430 RKEAESCDCLQGFQLTH 480
            +EA+  D L+GF L H
Sbjct: 123 DREADGSDSLEGFSLLH 139



 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 24/59 (40%), Positives = 40/59 (67%)
 Frame = +2

Query: 74  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 250
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYI 61



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
 Frame = +3

Query: 510 GTLLIXKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSV 635
           G+ L+ ++ + YP +I+ TYSV P S  VSD VV+PYN+ L++
Sbjct: 150 GSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLAL 192


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 110 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 211
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 304 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 405
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 373 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 462
           A+GH   G ELV +  D +RK++E+   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 446 DSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 309
           ++A+ RTTS T+    +PS       L P P    +  S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 325  RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 456
            RP   +F     G++   G   +  E  D ++ +  +  ESCDC
Sbjct: 955  RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 362 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 267
           P+   PK  L  R I P GPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,693
Number of Sequences: 5004
Number of extensions: 42146
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)