Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060693.seq
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 98 8e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 49 5e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 42 8e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 41 1e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 2e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.035
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.061
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 31 0.14
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 31 0.19
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 30 0.33
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 29 0.43
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 29 0.75
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 1.7
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 2.3
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 4.0
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 7.0
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.0
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 25 9.3
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 98.3 bits (234), Expect = 8e-22
Identities = 44/83 (53%), Positives = 55/83 (66%)
Frame = +3
Query: 264 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 443
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 444 KTMGYKEPTPIQAQGWPIAMSGR 512
K +G++ PTPIQ Q WP+AMSGR
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGR 160
Score = 42.3 bits (95), Expect = 6e-05
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +2
Query: 509 KNLVGVLKRVPAKRWPTSXPAIVHINNQPPIRRXDGPIALVLAP 640
+++VG+ K PAIVHIN QP + DGPI LVLAP
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAP 203
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 49.2 bits (112), Expect = 5e-07
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 261 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 437
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 438 GVKTMGYKEPTPIQAQGWPIAMSGR 512
+ ++GY++PT IQAQ P SGR
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
Score = 34.7 bits (76), Expect = 0.011
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 509 KNLVGVLKRVPAKRWPTSXPAIVHINNQPPIRRXDGPIALVLAP 640
++++GV K K P HI +Q P++ +GPIA+++ P
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTP 499
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 390 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
PI F+E + +++G+K YKEPTPIQA WP ++GR
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.1 bits (92), Expect = 1e-04
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +3
Query: 345 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 503
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL 284
Score = 29.1 bits (62), Expect = 0.57
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 509 KNLVGVLKRVPAKRWPTSXPAIVHINNQPPIRRXD---GPIALVLAP 640
K+L+G+ + K P I+ I+ PP+ + GP A+VLAP
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAP 333
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 360 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SGR
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.1 bits (72), Expect = 0.035
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 402 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA 524
FE+ + G+ G++ P+PIQ + PIA+SGR LA
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.061
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 336 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 485
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 402 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
F+E D + + + +G+K PTPIQ + P+ ++ R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 330 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 509
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 510 R 512
R
Sbjct: 127 R 127
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 29.9 bits (64), Expect = 0.33
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +2
Query: 155 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQIGFCF 265
+ D++ + + + + +NS+++ +C+ Q+GFCF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 29.5 bits (63), Expect = 0.43
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 402 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
F+ N +++ V G+K+ TP+QA P+ + +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 532 TGSGKTLAYIL 564
TGSGKTLAY+L
Sbjct: 47 TGSGKTLAYLL 57
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 28.7 bits (61), Expect = 0.75
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +3
Query: 372 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
G+ + + F + N +Q+ + +++PT +Q++ P+A+ G+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 402 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
F+ + + + G+K PTPIQ + P+ + GR
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 529 QTGSGKTLAYIL 564
QTGSGKTLAY+L
Sbjct: 186 QTGSGKTLAYLL 197
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 252 LDSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 398
+D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 111 IDVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -2
Query: 527 VRQLNSSRHSYRPALSLNRRRFFVT--HCLYTLLHIIRKICFFKVLNRIMNLNATYSYLV 354
V +L+++ H +L R FV H L ++ + F K ++ + + SY++
Sbjct: 675 VNRLSTTGHFLAYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVL 734
Query: 353 IISVLFDFIW 324
I+ + +W
Sbjct: 735 ILCPVHPIVW 744
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 453 PLSLHLVAHNQENL--LLQSIE 394
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 9.3
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +3
Query: 330 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 509
++E+Y TVS V V + N + VQ + KE +A G I S
Sbjct: 132 KIEKYTKETRPTVSEVRVSTKDKKEYSMNTSNLVQSNPPKVHDKENAFAEATGTSILSSK 191
Query: 510 RI*LAYSNGFRQNVGLHL-XQPLC 578
+ + F +N HL +P C
Sbjct: 192 AVQTLLVSDFTENEPKHLSIRPNC 215
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 274 LSTKTFMIHILQFSKDHHMKSKSTEIIT 357
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,713
Number of Sequences: 5004
Number of extensions: 47783
Number of successful extensions: 154
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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