Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060693.seq
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 7e-14
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 61 9e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 57 1e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 50 1e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 5e-06
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 47 1e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 3e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 32 0.46
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 31 1.1
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 31 1.1
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 1.8
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 29 2.4
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 29 3.2
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 28 5.6
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 7.4
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 7.4
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 74.5 bits (175), Expect = 7e-14
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = +3
Query: 246 PRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 425
P + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 426 YVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
+ ++ + Y +PT IQ Q PIA+SGR
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGR 555
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 509 KNLVGVLKRVPAKRWPTSXPAIVHINNQPPIRRXDGPIALVLAP 640
++++G+ K K PA+VHI +QP ++ DGPI L+ AP
Sbjct: 555 RDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAP 598
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +3
Query: 318 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 485
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 566 PAIVHINNQPPIRRXDGPIALVLAP 640
P IVHIN+QP ++ DGPI LVL P
Sbjct: 116 PGIVHINHQPLLQPGDGPIVLVLCP 140
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +3
Query: 258 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQ 434
+V QPF K+FY P + K +P E +E+R + E + V G P++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGR 512
+K Y++PTPIQAQ P+ MSGR
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGR 143
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +3
Query: 291 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 470
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 471 PIQAQGWPIAMSGR 512
PIQ Q P+ +SGR
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 342 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + R
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 330 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 497
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 498 AMSG 509
G
Sbjct: 197 MAHG 200
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +3
Query: 276 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 455
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 456 YKEPTPIQAQGWPIAMSGR 512
++ PTPIQ Q MSGR
Sbjct: 92 FQVPTPIQMQSLSCVMSGR 110
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = +3
Query: 357 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
EV VSG I FEEAN + V+ YK+PTP+Q PI ++GR
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = +3
Query: 357 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
EV VSG I FEEAN + V+ YK+PTP+Q PI ++GR
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 366 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
VSG I F E F + + + GY+ PTP+Q PI M+GR
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 393 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
++ F + G+ G+ PT IQ QG P+A+SGR
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGR 88
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 393 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
I FE+ + + + V GYK+PTP+Q PI R
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKR 913
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 378 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 491
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 402 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA 524
FE+ + G+ G+ +P+PIQ + P+A++GR LA
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILA 89
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 402 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGRI*LA 524
FE+ + G+ G+ +P+PIQ + P+A++GR LA
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILA 89
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 288 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 428
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGR 512
+ V +G+ PTPIQA P+A+ G+
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGK 48
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 354 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 506
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 28.3 bits (60), Expect = 5.6
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Frame = +3
Query: 231 SEHASPRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ---- 398
SE AS S SLQ N N DP L R+ + R +VT ++ P Q
Sbjct: 239 SEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLLVRTITKVTFLQQQIAQPRQLTLT 298
Query: 399 -YFEEANFPDYV----QQG--VKTMGYKEPTPIQAQG 488
YF E + DYV Q G + G P+P + G
Sbjct: 299 KYF-ETDSSDYVVELLQDGSAANSKGSDTPSPASSGG 334
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 238 CSDLQRILFSHQILQILQIYCHRC-QIETN 152
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 169 CQIETNYRRICCLLQIWN-HRFHGYYSS 89
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 430 CNKV*RQWVTKNRRLFKLKAGR*LCLEEFSWRTQTGSGK 546
CN+ R V K+RRL AGR L T +GS K
Sbjct: 59 CNESGRMSVDKDRRLISTSAGRVTKLPPIGAPTSSGSNK 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,066,208
Number of Sequences: 59808
Number of extensions: 347924
Number of successful extensions: 934
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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