Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060693.seq
         (642 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    39   2e-04
EF519370-1|ABP68479.1|  452|Anopheles gambiae LRIM1 protein.           26   0.88 
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    24   4.7  
AF043440-1|AAC05665.1|  234|Anopheles gambiae putative pupal-spe...    23   8.2  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 38.7 bits (86), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 357 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
           +V VSG    + ++ FE +   + V   V+   Y +PTPIQ    PI ++GR
Sbjct: 161 QVRVSGENPPDHVESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGR 212



 Score = 23.0 bits (47), Expect = 8.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 529 QTGSGKTLAYIL 564
           QTGSGKT A++L
Sbjct: 219 QTGSGKTAAFML 230


>EF519370-1|ABP68479.1|  452|Anopheles gambiae LRIM1 protein.
          Length = 452

 Score = 26.2 bits (55), Expect = 0.88
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 110 TVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKNSLE 229
           T++ +L+E   S +  LDL    +D  +L +L    +SLE
Sbjct: 140 TMLRDLDEGCRSRVQYLDLKLNEIDTVNLAELAASSDSLE 179


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 16/70 (22%), Positives = 26/70 (37%)
 Frame = +3

Query: 231 SEHASPRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE 410
           SE     +   +++P     Y+P P VL  +   V E   + ++ +    V       EE
Sbjct: 97  SEDVESSIPVSTIEPNLVEVYEPPPVVLIDTGNNVVEVNTDDQIVLEDGSVEGESNEQEE 156

Query: 411 ANFPDYVQQG 440
           A    Y   G
Sbjct: 157 AQIDVYHVDG 166


>AF043440-1|AAC05665.1|  234|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 234

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 309 VLKRSPYEVEEYRNNHEVTVSGVEVHNPIQY 401
           V++R P  V+  +  H+V    V VH P+ +
Sbjct: 139 VVRREPSAVKIAQPVHKVIAQPVHVHAPVAH 169


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,830
Number of Sequences: 2352
Number of extensions: 11649
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)