Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060693.seq
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       54   1e-09
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.47 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.47 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.47 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.47 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 54.0 bits (124), Expect = 1e-09
 Identities = 25/55 (45%), Positives = 33/55 (60%)
 Frame = +3

Query: 348 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 512
           +N +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+GR
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGR 234


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 467 DAYSSSRLADSYVWKNLVGVLKRVPA 544
           ++ S  + A +YVWKN  G L++ P+
Sbjct: 205 ESISYEQTAITYVWKNDEGTLRKSPS 230


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 467 DAYSSSRLADSYVWKNLVGVLKRVPA 544
           ++ S  + A +YVWKN  G L++ P+
Sbjct: 205 ESISYEQTAITYVWKNDEGTLRKSPS 230


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 467 DAYSSSRLADSYVWKNLVGVLKRVPA 544
           ++ S  + A +YVWKN  G L++ P+
Sbjct: 256 ESISYEQTAITYVWKNDEGTLRKSPS 281


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 467 DAYSSSRLADSYVWKNLVGVLKRVPA 544
           ++ S  + A +YVWKN  G L++ P+
Sbjct: 205 ESISYEQTAITYVWKNDEGTLRKSPS 230


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 258 NPIWATHVLTSREFFFP 208
           +P+W  H+   R   FP
Sbjct: 633 SPVWGRHIYDGRAMGFP 649


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 258 NPIWATHVLTSREFFFP 208
           +P+W  H+   R   FP
Sbjct: 633 SPVWGRHIYDGRAMGFP 649


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 89  TGIIAVETVVPNLEEATNSA 148
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,663
Number of Sequences: 438
Number of extensions: 3210
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)