Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060692.seq
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 118 9e-28
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 80 3e-16
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 2.3
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 3.0
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 26 4.0
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 26 5.2
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 5.2
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 25 9.1
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 9.1
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 118 bits (283), Expect = 9e-28
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Frame = +1
Query: 265 QVAMSKFDKVP-LPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYLR 441
+VAMS F+K + Y+++ NLE+VKKRL R LT SEKILY HLDDP Q+IERG SYL+
Sbjct: 27 KVAMSNFEKNKFINYQRIKDNLEIVKKRLNRPLTYSEKILYGHLDDPVNQDIERGVSYLK 86
Query: 442 LRPDRVAMQDATAQMAMLQFISSAFP 519
LRPDRVA QDATAQMA+LQF+S+ P
Sbjct: 87 LRPDRVACQDATAQMAILQFMSAGMP 112
Score = 62.5 bits (145), Expect = 5e-11
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = +3
Query: 510 GLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFLE 635
G+P VAVP T+HCDHLIEA GG DL RA NKEVY FL+
Sbjct: 110 GMPEVAVPVTVHCDHLIEAYEGGPIDLERANVTNKEVYDFLQ 151
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 79.8 bits (188), Expect = 3e-16
Identities = 46/90 (51%), Positives = 61/90 (67%), Gaps = 7/90 (7%)
Frame = +1
Query: 259 RAQVAMSKFDKVPLPYEKLTKNLEVVKKRL-GRELTLSEKILYSHLDDPK------GQEI 417
R Q S+ V PYEKL L+ V+K L G++LTL+EK+LYSHL +P+
Sbjct: 23 RFQSTASRASYVTPPYEKLMGKLQQVRKFLPGQKLTLAEKVLYSHLVNPEESFSGVSPSD 82
Query: 418 ERGASYLRLRPDRVAMQDATAQMAMLQFIS 507
RG+ YL+L PDRVAMQDA+AQMA+LQF++
Sbjct: 83 IRGSLYLKLNPDRVAMQDASAQMALLQFMT 112
Score = 43.2 bits (97), Expect = 3e-05
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 510 GLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFLE 635
GL + +P++IHCDHLI G D+ + NKE++ FL+
Sbjct: 114 GLEKTMIPASIHCDHLIVGHRGANSDIPDSIANNKEIFDFLQ 155
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = +1
Query: 199 QGWYSLKSNKDVSAYLH*PRRAQVAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKI 378
+G S K K + Y+ + + S K L E++ +L K LG++ T EK+
Sbjct: 81 EGSISSKKKKRLDKYIENKLKKEEVASLIAK--LAEERIDTSLLSSSKNLGKQATAKEKL 138
Query: 379 LYSHLDDPKGQEIERGASYL 438
S L++ G + S L
Sbjct: 139 KKSLLEEKLGLPLSDADSRL 158
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 284 NLDIATWARRGQWRYAETSLLDFREYHP 201
N D TWA +WR + SL+ HP
Sbjct: 44 NDDTETWAITSEWRAGDASLMRVAWAHP 71
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3
Query: 283 TWTSPPGRGGVNGDTLK-HLCWI 218
T+ +PPG+G + DT K H WI
Sbjct: 39 TYITPPGQGFLPSDTAKHHRAWI 61
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 540 IHCDHLIEAQVGGEKDLARAKDLNKEVYKFLE 635
IH DH IE + + LA+ K +N V F+E
Sbjct: 124 IHTDHSIEVIITEMEALAKRKLVNDAVKHFIE 155
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 277 SKFDKVPLPYEKLTKNLEVVKKR 345
+KFD+V +PY+ + ++E KR
Sbjct: 396 AKFDEVDMPYDTIWLDIEYASKR 418
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 235 KHLCWISESTTLVLLPWPCKTLIQCAMVAGLQYIKRINLEKF 110
++ CWIS TL+LL T +Q + L I RI F
Sbjct: 320 QYKCWISRDVTLILL-----TALQLVNIYWLILILRIGYRAF 356
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 443 CVPTVWPCKTPLHKWQCYNLSLRPSPCS 526
C+P+ P TP+ + Y L+ P CS
Sbjct: 11 CIPSSSPPSTPIREENYYLLTSSPIECS 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,449
Number of Sequences: 5004
Number of extensions: 54186
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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