Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060692.seq
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774...    31   0.58 
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842...    31   0.77 
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142...    29   2.3  
04_03_0282 - 13874547-13874738,13875047-13875134,13875222-138753...    29   3.1  
07_01_0023 - 154119-154541,154697-154741,154875-154922,156104-15...    27   9.4  
02_05_0469 + 29297209-29297527,29297847-29297961,29298060-292982...    27   9.4  

>04_04_1568 -
           34475707-34476822,34476894-34477083,34477330-34477464,
           34477571-34477668,34477789-34477979,34478784-34479286,
           34480169-34481568,34481655-34481855
          Length = 1277

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 320 FVNFS*GKGTLSNLDIATWARRGQWRYAETSLLDFREYHPCPATLAMQNSHTV 162
           FV+   G G ++  D+  W+R    RY     + FR+  P  +T  +QN   V
Sbjct: 486 FVSLKQGGGAVTAADVVAWSRERMPRYMVPKTVIFRDELPKTSTGKIQNGQPV 538


>09_02_0607 -
           11183382-11183387,11183481-11183637,11184220-11184284,
           11184397-11184469,11184759-11184905,11185515-11185562,
           11185637-11185716,11186112-11186439,11186525-11186576,
           11187397-11187523,11187613-11187990
          Length = 486

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 222 GFQRVPPLSCYPGHAKLSYSAPWSPD 145
           GF+R+P L C+P   +L+    WSP+
Sbjct: 202 GFKRIPSLECWPDVLQLTEPENWSPN 227


>04_04_1500 +
           34010819-34011016,34013267-34013308,34014195-34014204,
           34014526-34014586,34014621-34014678,34015266-34015412,
           34015643-34016205,34018942-34019728
          Length = 621

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 265 GRGGVNGDTLKHLCWISESTTLVLLP 188
           G GG +G+   +LCW+ E T+   LP
Sbjct: 277 GGGGDDGEDCGYLCWLEEETSAGALP 302


>04_03_0282 -
           13874547-13874738,13875047-13875134,13875222-13875328,
           13875487-13875542,13875853-13875882,13877397-13877505,
           13877774-13878318,13879584-13879668,13879753-13879914,
           13880293-13880434,13880524-13880624,13882307-13882489
          Length = 599

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 292 PCRTWTSPPGRGGVNGDTLK--HLCWISESTTLVLLPWPCKT 173
           P ++W SPP + GV+   +   HL W  E + L   P  C T
Sbjct: 557 PLQSWNSPPIQKGVSPRQIPGYHLQWKREQSVLEKSPASCPT 598


>07_01_0023 -
           154119-154541,154697-154741,154875-154922,156104-156185,
           156365-156444,156606-156677,156827-156921,157479-157515
          Length = 293

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 254 PAAPRWRCPSSTRYP 298
           PA+PR +CPSS R P
Sbjct: 253 PASPRHKCPSSPRQP 267


>02_05_0469 +
           29297209-29297527,29297847-29297961,29298060-29298255,
           29298427-29298540,29298695-29298868,29299326-29299520,
           29299666-29299788,29299892-29300004,29300117-29300237,
           29300363-29300623,29301712-29301921
          Length = 646

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 560 DQVITMNGGRYSYTGKAEEINCNIAI 483
           +Q+ T+N     +T + EE+NC  AI
Sbjct: 498 EQISTLNERMDEFTSRVEELNCKFAI 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,924,507
Number of Sequences: 37544
Number of extensions: 403444
Number of successful extensions: 1125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)