Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060692.seq
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)               70   1e-12
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_43494| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)          27   9.7  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
          Length = 193

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 31/46 (67%), Positives = 38/46 (82%)
 Frame = +3

Query: 495 TIYLFGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFL 632
           ++ L    +VAVPSTIHCDHLIEA+ GG +DLA+AKD+NKEVY FL
Sbjct: 98  SVSLSSWQKVAVPSTIHCDHLIEAKDGGSQDLAKAKDINKEVYNFL 143


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 496  VTLPFVQWRLAWPHGRDAGGDNLRRVQFPVLWGHPS 389
            +TLP  +W++A+  G     +N R+V + VL+G  S
Sbjct: 943  LTLPLRRWKIAFRFGAGTSDNNGRKVFYTVLFGQSS 978


>SB_43494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -1

Query: 411 LSFGVIQVRI*DFLRQGQFSP*PLLNHL*ILRQLFVRQGYLVELGHRH 268
           L F ++Q  + D+L+Q +F+P PL +   I++Q+ V    L  LG  H
Sbjct: 174 LVFEMLQQNLYDYLKQSKFNPLPLKHIRPIVQQVLVALSKLRTLGLIH 221


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +1

Query: 232  VSAYLH*PRRAQVAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDD 399
            +   +H P          DKV  P EKL   LE    RL ++  L  ++     DD
Sbjct: 1425 IEGNVHDPETVAAVQESIDKVRTPIEKLNGKLEQRSARL-QDAGLQSQVFQDSCDD 1479


>SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)
          Length = 1264

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 560 DQVITMNGGRYSYTGKAEEINCNIAI 483
           DQ++ +  GR +  GK EE+N N A+
Sbjct: 749 DQIVLLKEGRVAAKGKYEELNENTAL 774


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 219 FQRVPPLSCYPGHAKLSYSAPWSPDFSILNELI 121
           F R   L CYP   +L  S P +PD+  +  L+
Sbjct: 676 FTRADKLWCYPPQPQLISSQPPNPDYYFIQPLL 708


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,928,314
Number of Sequences: 59808
Number of extensions: 435487
Number of successful extensions: 1185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)