Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060692.seq
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...   128   3e-30
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...   105   3e-23
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...    77   1e-14
Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z47073-1|CAA87371.3|  931|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z83224-2|CAE17796.1|  208|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81125-11|CAE17965.1|  208|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z81125-7|CAJ85774.1|   84|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z81514-2|CAB04189.1|  283|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score =  128 bits (309), Expect = 3e-30
 Identities = 64/87 (73%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
 Frame = +1

Query: 262 AQVAMSKFD-KVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYL 438
           ++VA+SKF+ K  LPYEKL++ +++VK RL R LTLSEKILY HLD PK Q+IERG SYL
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILYGHLDQPKTQDIERGVSYL 86

Query: 439 RLRPDRVAMQDATAQMAMLQFISSAFP 519
           RLRPDRVAMQDATAQMAMLQFISS  P
Sbjct: 87  RLRPDRVAMQDATAQMAMLQFISSGLP 113



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +3

Query: 510 GLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFL 632
           GLP+ AVPSTIHCDHLIEAQ GG +DLARAKDLNKEV+ FL
Sbjct: 111 GLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKEVFNFL 151


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score =  105 bits (252), Expect = 3e-23
 Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
 Frame = +1

Query: 262 AQVAMSKFD-KVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYL 438
           ++VA+SKF+ K  LPYEKL++ +++VK RL R LTLSEKILY HLD PK Q+IERG SYL
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILYGHLDQPKTQDIERGVSYL 86

Query: 439 RLRPDRVAMQDATAQMA 489
           RLRPDRVAMQDA   MA
Sbjct: 87  RLRPDRVAMQDAVDVMA 103


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/41 (82%), Positives = 37/41 (90%)
 Frame = +3

Query: 510 GLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFL 632
           GLP+ AVPSTIHCDHLIEAQ GG +DLARAKDLNKEV+ FL
Sbjct: 17  GLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKEVFNFL 57



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +1

Query: 463 MQDATAQMAMLQFISSAFP 519
           MQDATAQMAMLQFISS  P
Sbjct: 1   MQDATAQMAMLQFISSGLP 19


>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 268 VAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDP 402
           VA + F K P P  +    ++VVK+ L     L+E+I+ SH   P
Sbjct: 17  VAQAAFRKYPNPLNRSITGIDVVKQTLEAGKILTERIIQSHFSIP 61


>Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical
           protein F31B12.3 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +1

Query: 283 FDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLD 396
           FDKV  P  K  KN+ + K +L   L LS KIL+   D
Sbjct: 128 FDKVVKP--KTGKNIVIYKVKLLTNLNLSNKILFQFQD 163


>Z47073-1|CAA87371.3|  931|Caenorhabditis elegans Hypothetical
           protein ZC506.1 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 205 WYSLKSNKDVSAYLH*PRRAQVAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSE--KI 378
           ++  ++ KD   YLH  ++   +++K+ KVP  +  L     +VK+       LSE  K 
Sbjct: 386 YFLYRATKDPH-YLHVAKQIMDSINKYVKVPCGFAALKDIRTMVKEDQMESFVLSETFKY 444

Query: 379 LYSHLDDPK 405
           LY    DP+
Sbjct: 445 LYMIFTDPE 453


>Z83224-2|CAE17796.1|  208|Caenorhabditis elegans Hypothetical
           protein F29C6.1a protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
 Frame = +3

Query: 510 GLPRVAV-PSTIHCDHLIEAQVGG----EKDLARAKDLNKEV 620
           G+P + +   T+H D LIE Q+ G    EKD ++ +D N+EV
Sbjct: 143 GIPFIYIFKETVHADGLIEDQIAGMSLKEKDESKVED-NEEV 183


>Z81125-11|CAE17965.1|  208|Caenorhabditis elegans Hypothetical
           protein F29C6.1a protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
 Frame = +3

Query: 510 GLPRVAV-PSTIHCDHLIEAQVGG----EKDLARAKDLNKEV 620
           G+P + +   T+H D LIE Q+ G    EKD ++ +D N+EV
Sbjct: 143 GIPFIYIFKETVHADGLIEDQIAGMSLKEKDESKVED-NEEV 183


>Z81125-7|CAJ85774.1|   84|Caenorhabditis elegans Hypothetical
           protein F29C6.1b protein.
          Length = 84

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
 Frame = +3

Query: 510 GLPRVAV-PSTIHCDHLIEAQVGG----EKDLARAKDLNKEV 620
           G+P + +   T+H D LIE Q+ G    EKD ++ +D N+EV
Sbjct: 19  GIPFIYIFKETVHADGLIEDQIAGMSLKEKDESKVED-NEEV 59


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 274  MSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKIL 381
            +++FD + L     T+ +E  K++L  ELT +++I+
Sbjct: 1037 IARFDNIALNERNSTRKIEREKEKLNEELTTAKEII 1072


>Z81514-2|CAB04189.1|  283|Caenorhabditis elegans Hypothetical
           protein F26F2.3 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 180 HGQGSRTRVVLSEIQQRCFSVSPLTPPRPGGD--VQVRQGTLAL 305
           H      R+ LS +QQR  SVS     + G D  VQVR+G+  L
Sbjct: 5   HDSRGTDRIRLSNVQQRDGSVSHFYQHQEGTDIQVQVRRGSAKL 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,206,322
Number of Sequences: 27780
Number of extensions: 314219
Number of successful extensions: 852
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)