Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060692.seq
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25730.1 68415.m03084 expressed protein                             32   0.37 
At2g15680.1 68415.m01795 calmodulin-related protein, putative si...    28   6.0  
At4g33150.2 68417.m04723 lysine-ketoglutarate reductase/saccharo...    27   7.9  
At4g33150.1 68417.m04722 lysine-ketoglutarate reductase/saccharo...    27   7.9  

>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 428  QVISACVPTVWPCKTPLHKWQCYNLSLRPSPCS 526
            +VISACVP V+P ++  H W C  + +  +PCS
Sbjct: 1081 EVISACVPPVYPPRSG-HGWACIPV-IPTTPCS 1111


>At2g15680.1 68415.m01795 calmodulin-related protein, putative
           similar to calmodulin-related protein 2, touch-induced
           SP:P25070 from [Arabidopsis thaliana]
          Length = 187

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -1

Query: 567 GLRSSD-HNEWWTVQLHGEGR 508
           G+RSSD  N +WT  L+G+G+
Sbjct: 116 GIRSSDIRNSFWTFDLNGDGK 136


>At4g33150.2 68417.m04723 lysine-ketoglutarate
           reductase/saccharopine dehydrogenase bifunctional enzyme
           identical to lysine-ketoglutarate reductase/saccharopine
           dehydrogenase GI:2052508 from [Arabidopsis thaliana]
          Length = 1064

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 144 SPATMAHCMRVLHGQGSRTRV 206
           +P T +HC R+LHG   RT +
Sbjct: 31  TPLTPSHCARLLHGGKDRTGI 51


>At4g33150.1 68417.m04722 lysine-ketoglutarate
           reductase/saccharopine dehydrogenase bifunctional enzyme
           identical to lysine-ketoglutarate reductase/saccharopine
           dehydrogenase GI:2052508 from [Arabidopsis thaliana]
          Length = 1064

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 144 SPATMAHCMRVLHGQGSRTRV 206
           +P T +HC R+LHG   RT +
Sbjct: 31  TPLTPSHCARLLHGGKDRTGI 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,796
Number of Sequences: 28952
Number of extensions: 300843
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)