Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060691.seq
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   0.91 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   3.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   3.7  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   3.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.7  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   3.7  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   4.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.8  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   4.8  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   6.4  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 212 FIKVIYCQTF-VSPAIGATLQTFLDLKVLITDDFP 111
           F+K  Y   F + PA+ AT+Q  LDL V+  +  P
Sbjct: 306 FLKRPYPVPFALRPAVDATIQEMLDLGVIKREASP 340


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 625 FSLSGYLLFFVCNFNSFFILCLL 557
           F ++G++  F C+ NS    CL+
Sbjct: 366 FPVAGFISDFDCDINSIQYFCLM 388


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 49  FGKLHIDKKQISVGFIGYPNVGKSSVIN 132
           FG  HI ++Q+  G+  + N   + + N
Sbjct: 50  FGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 49  FGKLHIDKKQISVGFIGYPNVGKSSVIN 132
           FG  HI ++Q+  G+  + N   + + N
Sbjct: 50  FGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 327  IEEVIKRVRKEYLVKTYKVDGWETATEFLEKLAARTGKLLKKGE 458
            I+EV  ++   YLVK YKV     + E + K+     +++ K E
Sbjct: 1020 IQEVRAKIYFFYLVKFYKV---SKSGELIHKIETNEHEIIDKIE 1060


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 327 IEEVIKRVRKEYLVKTYKVDGWETATEFLEKLAARTGKLLKKGE 458
           I+EV  ++   YLVK YKV     + E + K+     +++ K E
Sbjct: 301 IQEVRAKIYFFYLVKFYKV---SKSGELIHKIETNEHEIIDKIE 341


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 49  FGKLHIDKKQISVGFIGYPNVGKSSVIN 132
           FG  HI ++Q+  G+  + N   + + N
Sbjct: 50  FGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 49  FGKLHIDKKQISVGFIGYPNVGKSSVIN 132
           FG  HI ++Q+  G+  + N   + + N
Sbjct: 50  FGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +3

Query: 249 SIAETDTEKVLKGVVRVELVQNPDDYIEEVIKRVRKEYLVKTYKVDGWETATEFLEKLAA 428
           S+   D ++    +VR  L    D+Y E        +  ++T + D      E++E LA+
Sbjct: 8   SVFRLDQDQCSHRIVREHLGLKHDNYYELETHIFFDDAFIRTSEDDNDPHVNEYVESLAS 67


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +3

Query: 249 SIAETDTEKVLKGVVRVELVQNPDDYIEEVIKRVRKEYLVKTYKVDGWETATEFLEKLAA 428
           S+   D ++    +VR  L    D+Y E        +  ++T + D      E++E LA+
Sbjct: 322 SVFRLDQDQCSHRIVREHLGLKHDNYYELETHIFFDDAFIRTSEDDNDPHVNEYVESLAS 381


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +3

Query: 249 SIAETDTEKVLKGVVRVELVQNPDDYIEEVIKRVRKEYLVKTYKVDGWETATEFLEKLAA 428
           S+   D ++    +VR  L    D+Y E        +  ++T + D      E++E LA+
Sbjct: 555 SVFRLDQDQCSHRIVREHLGLKHDNYYELETHIFFDDAFIRTSEDDNDPHVNEYVESLAS 614


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +3

Query: 249 SIAETDTEKVLKGVVRVELVQNPDDYIEEVIKRVRKEYLVKTYKVDGWETATEFLEKLAA 428
           S+   D ++    +VR  L    D+Y E        +  ++T + D      E++E LA+
Sbjct: 555 SVFRLDQDQCSHRIVREHLGLKHDNYYELETHIFFDDAFIRTSEDDNDPHVNEYVESLAS 614


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 610 YLLFFVCNFNSFFILCLL 557
           YL+ F   FN F+++ LL
Sbjct: 359 YLILFSIGFNCFWVMKLL 376


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 625 FSLSGYLLFFVCNFNSFFILCLLR 554
           FS+   LLF +C   S ++  +L+
Sbjct: 263 FSIDNALLFSICGAASSYLFIMLQ 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,228
Number of Sequences: 336
Number of extensions: 2979
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)