Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060691.seq
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 161 6e-40
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07) 48 6e-06
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 32 0.33
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 32 0.44
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31) 29 3.1
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36) 28 7.1
SB_25297| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 161 bits (390), Expect = 6e-40
Identities = 71/82 (86%), Positives = 79/82 (96%)
Frame = +1
Query: 10 PFGKGSLINLLRQFGKLHIDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETKV 189
PFGKG+LINLLRQF KLH DKKQISVG IGYPNVGKSS+INTL++KKVCKVAPIAGETKV
Sbjct: 145 PFGKGALINLLRQFSKLHSDKKQISVGLIGYPNVGKSSIINTLKAKKVCKVAPIAGETKV 204
Query: 190 WQYITLMKRIFLIDCPGVVYPS 255
WQYITLM+RI+L+DCPGVVYP+
Sbjct: 205 WQYITLMRRIYLVDCPGVVYPT 226
Score = 111 bits (268), Expect = 3e-25
Identities = 49/91 (53%), Positives = 70/91 (76%)
Frame = +3
Query: 237 GCCLSIAETDTEKVLKGVVRVELVQNPDDYIEEVIKRVRKEYLVKTYKVDGWETATEFLE 416
G +T+TE +LKGVVRVE V+ ++I V++RV++EYL KTY+V W+ T+FLE
Sbjct: 221 GVVYPTGDTETEIILKGVVRVENVKEAAEHIPTVLERVKREYLAKTYRVQAWDDCTDFLE 280
Query: 417 KLAARTGKLLKKGEPDVNQVARMVLNDWQRG 509
+++ R+GKLLK GEPD+N VA+M+LND+QRG
Sbjct: 281 QVSRRSGKLLKGGEPDINTVAKMILNDFQRG 311
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 67.7 bits (158), Expect = 7e-12
Identities = 33/77 (42%), Positives = 47/77 (61%)
Frame = +1
Query: 16 GKGSLINLLRQFGKLHIDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETKVWQ 195
G +L+ LL + + K I+VG +G+PNVGKSS+IN+L+ + C V G TK Q
Sbjct: 435 GAETLLKLLGNYCRNKDIKTSITVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQ 494
Query: 196 YITLMKRIFLIDCPGVV 246
+ L K I L+D PG+V
Sbjct: 495 EVQLDKHIKLLDSPGIV 511
>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
Length = 299
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = +1
Query: 82 SVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETKVWQYI 201
++G +GYPNVGKSS INT+ K V+ G TK +QY+
Sbjct: 162 TIGLVGYPNVGKSSTINTILQSKKVAVSSTPGRTKHFQYV 201
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 213 ENILD*LSGCCLSIAETDTEKVLKGVVRVELVQNPDDYIEEV 338
+NI+D C+S+ ET ++G R E+++N +DYI EV
Sbjct: 302 QNIID---AACISVGETMGLNHMEGQFRQEVLRNLEDYIREV 340
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 85 VGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETK 186
V +G PNVGKS+++N + ++ V + G T+
Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTR 57
>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
Length = 303
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +1
Query: 85 VGFIGYPNVGKSSVINTL 138
+GF+G+P+VGKS+++ L
Sbjct: 51 IGFVGFPSVGKSTLLTNL 68
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +1
Query: 64 IDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETK---VWQYITLMKRIFLIDC 234
ID ++ G+PNVGKSS +N + V V P A TK V R ++D
Sbjct: 79 IDPNTRTLLVCGFPNVGKSSFMNKVTRADV-DVQPYAFTTKSLFVGHMDYKYLRWQVVDT 137
Query: 235 PGVVYPSLKQ 264
PGV+ L++
Sbjct: 138 PGVLDHPLEE 147
>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
Length = 365
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 85 VGFIGYPNVGKSSVINTL-RSKKVCKVAPIAGETKVWQYITLM-KRIFLIDCPGVV 246
V IG+P+VGKS+++ L +++ C T + I I L+D PG++
Sbjct: 66 VALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTCIPGVINYNGANIQLLDLPGII 121
>SB_25297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 103 PNVGKSSVINTLRSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVVYPSL 258
P +G +++ R + + I T+ + + ++ R FL+ PG VYP L
Sbjct: 30 PGMGIPLLMDVFRITQPSHLIQINSTTQASRNLPILTRDFLMSTPGWVYPVL 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,651,929
Number of Sequences: 59808
Number of extensions: 305178
Number of successful extensions: 733
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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