Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060691.seq
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.3  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 198 ILPNFCFTSNWGYFTNF 148
           +LPN C+   + YF  F
Sbjct: 94  VLPNSCYQERYEYFPGF 110


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 198 ILPNFCFTSNWGYFTNF 148
           +LPN C+   + YF  F
Sbjct: 94  VLPNSCYQERYEYFPGF 110


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 215 LFIKVIYCQTFVSPAIGATL 156
           LF+ + YC + ++P I ATL
Sbjct: 411 LFLWLGYCNSLLNPIIYATL 430


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 292 TTPFNTFSVSVSAMDKQHP 236
           TTP +   + VS+ DK HP
Sbjct: 258 TTPLDEKPLDVSSNDKVHP 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,095
Number of Sequences: 438
Number of extensions: 3259
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)