Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060691.seq
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa... 144 3e-35
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 74 7e-14
At2g27200.1 68415.m03269 GTP-binding family protein contains Pfa... 69 3e-12
At1g08410.1 68414.m00930 GTP-binding family protein contains Pfa... 67 1e-11
At4g02790.1 68417.m00379 GTP-binding family protein contains Pfa... 61 5e-10
At5g11480.1 68418.m01340 expressed protein 41 8e-04
At2g22870.1 68415.m02715 expressed protein 40 0.002
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa... 36 0.017
At1g02280.1 68414.m00169 GTP-binding protein (TOC33) identical t... 36 0.029
At5g58370.2 68418.m07309 expressed protein 35 0.038
At5g58370.1 68418.m07308 expressed protein 35 0.038
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 34 0.067
At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to ... 34 0.067
At2g41670.1 68415.m05148 GTP-binding family protein contains Pfa... 33 0.21
At1g78010.1 68414.m09091 tRNA modification GTPase, putative simi... 33 0.21
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ... 32 0.27
At1g33530.1 68414.m04149 F-box family protein contains F-box dom... 32 0.36
At1g30580.1 68414.m03741 expressed protein 31 0.47
At3g01850.2 68416.m00129 ribulose-phosphate 3-epimerase, cytosol... 31 0.83
At3g01850.1 68416.m00128 ribulose-phosphate 3-epimerase, cytosol... 31 0.83
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 29 1.9
At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondria... 29 1.9
At1g80770.1 68414.m09476 expressed protein 29 1.9
At1g07630.1 68414.m00818 protein phosphatase 2C family protein /... 29 1.9
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 29 2.5
At5g66470.1 68418.m08382 expressed protein 28 5.8
At4g28740.1 68417.m04110 expressed protein 28 5.8
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 28 5.8
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P... 28 5.8
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR... 27 7.7
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 27 7.7
At3g24430.1 68416.m03066 expressed protein contains Pfam profile... 27 7.7
At1g67460.1 68414.m07681 hypothetical protein contains Pfam doma... 27 7.7
At1g48110.1 68414.m05369 expressed protein contains Pfam profile... 27 7.7
At1g09180.1 68414.m01025 GTP-binding protein, putative strong si... 27 7.7
>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 576
Score = 144 bits (350), Expect = 3e-35
Identities = 66/84 (78%), Positives = 75/84 (89%)
Frame = +1
Query: 4 HEPFGKGSLINLLRQFGKLHIDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGET 183
++ FGKGSL+++LRQF +L DK+ ISVGF+GYPNVGKSSVINTLR+K VCKVAPI GET
Sbjct: 285 NKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGET 344
Query: 184 KVWQYITLMKRIFLIDCPGVVYPS 255
KVWQYITL KRIFLIDCPGVVY S
Sbjct: 345 KVWQYITLTKRIFLIDCPGVVYQS 368
Score = 94.3 bits (224), Expect = 6e-20
Identities = 42/84 (50%), Positives = 63/84 (75%)
Frame = +3
Query: 258 ETDTEKVLKGVVRVELVQNPDDYIEEVIKRVRKEYLVKTYKVDGWETATEFLEKLAARTG 437
+T+T+ VLKGVVRV +++ ++I EV++RV+KE+L + YK+ WE +FL +L +G
Sbjct: 370 DTETDIVLKGVVRVTNLEDASEHIGEVLRRVKKEHLQRAYKIKDWEDDHDFLLQLCKSSG 429
Query: 438 KLLKKGEPDVNQVARMVLNDWQRG 509
KLLK GEPD+ A+M+L+DWQRG
Sbjct: 430 KLLKGGEPDLMTGAKMILHDWQRG 453
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 74.1 bits (174), Expect = 7e-14
Identities = 37/77 (48%), Positives = 49/77 (63%)
Frame = +1
Query: 16 GKGSLINLLRQFGKLHIDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETKVWQ 195
G +LI LL+ + + H KK I+VG IG PNVGKSS+IN+L+ V V G T+ Q
Sbjct: 233 GADTLIKLLKNYSRSHELKKSITVGIIGLPNVGKSSLINSLKRAHVVNVGATPGLTRSLQ 292
Query: 196 YITLMKRIFLIDCPGVV 246
+ L K + L+DCPGVV
Sbjct: 293 EVHLDKNVKLLDCPGVV 309
Score = 68.1 bits (159), Expect = 4e-12
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +3
Query: 183 KSLAVYHLNEE-NILD*LSGCCLSIAETDTEKVLKGVVRVELVQNPDDYIEEVIKRVRKE 359
+SL HL++ +LD L + D L+ R+E + +P ++E++K K+
Sbjct: 289 RSLQEVHLDKNVKLLDCPGVVMLKSSGNDASIALRNCKRIEKLDDPVSPVKEILKLCPKD 348
Query: 360 YLVKTYKVDGWETATEFLEKLAARTGKLLKKGEPDVNQVARMVLNDWQRG 509
LV YK+ +E +FL K+A GKL K G D++ AR+VL+DW G
Sbjct: 349 MLVTLYKIPSFEAVDDFLYKVATVRGKLKKGGLVDIDAAARIVLHDWNEG 398
>At2g27200.1 68415.m03269 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 537
Score = 68.5 bits (160), Expect = 3e-12
Identities = 30/66 (45%), Positives = 44/66 (66%)
Frame = +1
Query: 73 KQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVVYP 252
+Q+ VGF+GYPNVGKSS IN L +K V G+TK +Q + + + + L DCPG+V+P
Sbjct: 303 EQVVVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISEDLMLCDCPGLVFP 362
Query: 253 SLKQTQ 270
S ++
Sbjct: 363 SFSSSR 368
>At1g08410.1 68414.m00930 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 589
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +1
Query: 70 KKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVVY 249
+ Q VGF+GYPNVGKSS IN L +K V G+TK +Q + + + L DCPG+V+
Sbjct: 306 RDQAVVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISDELMLCDCPGLVF 365
Query: 250 PSLKQTQ 270
PS ++
Sbjct: 366 PSFSSSR 372
>At4g02790.1 68417.m00379 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 372
Score = 61.3 bits (142), Expect = 5e-10
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = +1
Query: 73 KQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVV 246
+ + G IGYPNVGKSS+IN L +K+C AP G T+ +++ L K + L+D PG++
Sbjct: 212 RSVRAGIIGYPNVGKSSLINRLLKRKICAAAPRPGVTREMKWVKLGKDLDLLDSPGML 269
>At5g11480.1 68418.m01340 expressed protein
Length = 318
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Frame = +1
Query: 94 IGYPNVGKSSVINTL-RSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVVYPS----L 258
+G NVGKSS++N+L R K++ + G+T+ + + + +L+D PG Y S L
Sbjct: 141 VGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFRINDKWYLVDLPGYGYASAPHEL 200
Query: 259 KQTQRKY*KE 288
KQ K+ K+
Sbjct: 201 KQDWNKFTKD 210
>At2g22870.1 68415.m02715 expressed protein
Length = 300
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 67 DKKQISVGFIGYPNVGKSSVINTL-RSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPG 240
D+ +I++ +G NVGKSS+IN L R K+V + G+T++ + + K +++D PG
Sbjct: 119 DRPEIAI--LGRSNVGKSSLINCLVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPG 175
>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 663
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 82 SVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETK 186
++ IG PNVGKSS++N L + V+P++G T+
Sbjct: 370 AIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTR 404
>At1g02280.1 68414.m00169 GTP-binding protein (TOC33) identical to
atToc33 protein (GI:11557973) [Arabidopsis thaliana];
Carboxyl-terminal end highly similar to GTP-binding
protein SP:U43377, location of EST gb|AA394770 and
gb|R30089; identical to cDNA for chloroplast atToc33
protein GI:11557972
Length = 297
Score = 35.5 bits (78), Expect = 0.029
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +1
Query: 37 LLRQFGKL-HIDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGE--TKVWQYITL 207
L+ FGKL D ++V +G VGKSS +N+L ++V +V+P E V T+
Sbjct: 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM 81
Query: 208 MK-RIFLIDCPGVV 246
I +ID PG+V
Sbjct: 82 GGFTINIIDTPGLV 95
>At5g58370.2 68418.m07309 expressed protein
Length = 465
Score = 35.1 bits (77), Expect = 0.038
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 85 VGFIGYPNVGKSSVINTL-RSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPG 240
+ F G NVGKSS++N L R V + + G T+ + L ++ L+D PG
Sbjct: 291 IAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTINFFGLGPKVRLVDLPG 343
>At5g58370.1 68418.m07308 expressed protein
Length = 446
Score = 35.1 bits (77), Expect = 0.038
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 85 VGFIGYPNVGKSSVINTL-RSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPG 240
+ F G NVGKSS++N L R V + + G T+ + L ++ L+D PG
Sbjct: 291 IAFAGRSNVGKSSLLNALTRQWGVVRTSDKPGLTQTINFFGLGPKVRLVDLPG 343
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 34.3 bits (75), Expect = 0.067
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 70 KKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETK---VWQYITLMKRIFLIDCPG 240
K + + +G PNVGKS+++N L ++ V P AG T+ Q+ + ++L+D G
Sbjct: 310 KLPLQLAIVGKPNVGKSTLLNALLEEERVLVGPEAGLTRDAVRVQFEFQGRTVYLVDTAG 369
>At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to
GTP-binding protein ERG SP:O82653 from [Arabidopsis
thaliana]
Length = 437
Score = 34.3 bits (75), Expect = 0.067
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 67 DKKQISVGFIGYPNVGKSSVINTLRSKKV 153
D+K ++VG IG PN GKSS+ N + KV
Sbjct: 150 DQKSLNVGIIGPPNAGKSSLTNFMVGTKV 178
>At2g41670.1 68415.m05148 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 386
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 13/68 (19%)
Frame = +1
Query: 94 IGYPNVGKSSVINTLRS-----------KKVCKVAPIAGETKVWQYITLMKR--IFLIDC 234
+G PNVGKS++IN++ K V P+ G T+ + R I+++D
Sbjct: 142 VGVPNVGKSALINSIHQIAAARFPVQERLKRATVGPLPGVTQDIAGFKIAHRPSIYVLDS 201
Query: 235 PGVVYPSL 258
PGV+ PS+
Sbjct: 202 PGVLVPSI 209
>At1g78010.1 68414.m09091 tRNA modification GTPase, putative similar
to tRNA modification GTPase trmE [strain PCC 7120,
Anabaena sp.] SWISS-PROT:Q8YN91
Length = 560
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 79 ISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETK 186
+ + +G PNVGKSS++N + V +AG T+
Sbjct: 318 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTR 353
>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
GTP-binding protein SP:Q99ME9 from [Mus musculus]
Length = 671
Score = 32.3 bits (70), Expect = 0.27
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 64 IDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAPIAGETK---VWQYITLMKRIFLIDC 234
ID +V GYPNVGKSS +N + V V P A TK V R +ID
Sbjct: 164 IDPNTRTVLICGYPNVGKSSFMNKVTRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDT 222
Query: 235 PGVV 246
PG++
Sbjct: 223 PGIL 226
>At1g33530.1 68414.m04149 F-box family protein contains F-box domain
Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein
interaction domain
Length = 441
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 306 VQNPDDYIEEVIKRVRKEYLVKTYKVD-GWETATEFLEKLAARTGKLLKK 452
V+ PD +EE+++R+ +YLV+ + GW++ E + LA + +LL+K
Sbjct: 95 VELPDVLVEEILQRLPVKYLVRLKSISKGWKSLIE-SDHLAEKHLRLLEK 143
>At1g30580.1 68414.m03741 expressed protein
Length = 394
Score = 31.5 bits (68), Expect = 0.47
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 79 ISVGFIGYPNVGKSSVINTL 138
+ +G +G PNVGKS++ NTL
Sbjct: 25 LKIGIVGLPNVGKSTLFNTL 44
>At3g01850.2 68416.m00129 ribulose-phosphate 3-epimerase, cytosolic,
putative / pentose-5-phosphate 3-epimerase, putative
strong similarity to D-ribulose-5-phosphate 3-epimerase
[Oryza sativa] GI:6007803; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family; contains
non-consensus splice sites at exon 1 and exon2
Length = 225
Score = 30.7 bits (66), Expect = 0.83
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 303 LVQNPDDYIEEVIKRVRKEYLVKTYKV-DGWETATEFLEKLAARTGKLLKKGEPDVNQVA 479
+V NP DY+ ++ K + D W+ E ++ R G LK G P V QV
Sbjct: 69 MVTNPMDYVAQMAKAGASGFTFHVEVAQDNWQQLVEKIKSTGMRPGVALKPGTP-VEQVY 127
Query: 480 RMV 488
+V
Sbjct: 128 PLV 130
>At3g01850.1 68416.m00128 ribulose-phosphate 3-epimerase, cytosolic,
putative / pentose-5-phosphate 3-epimerase, putative
strong similarity to D-ribulose-5-phosphate 3-epimerase
[Oryza sativa] GI:6007803; contains Pfam profile
PF00834: Ribulose-phosphate 3 epimerase family; contains
non-consensus splice sites at exon 1 and exon2
Length = 225
Score = 30.7 bits (66), Expect = 0.83
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 303 LVQNPDDYIEEVIKRVRKEYLVKTYKV-DGWETATEFLEKLAARTGKLLKKGEPDVNQVA 479
+V NP DY+ ++ K + D W+ E ++ R G LK G P V QV
Sbjct: 69 MVTNPMDYVAQMAKAGASGFTFHVEVAQDNWQQLVEKIKSTGMRPGVALKPGTP-VEQVY 127
Query: 480 RMV 488
+V
Sbjct: 128 PLV 130
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +1
Query: 85 VGFIGYPNVGKSSVINTLRSKKVCKVA--PIAGETKVWQYITLM-KRIFLIDCPGVV 246
VG +G+P+VGKS+++N L + +VA T + IT +I L+D PG++
Sbjct: 68 VGLVGFPSVGKSTLLNKL-TGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGII 123
>At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondrial
(SODA) / manganese superoxide dismutase (MSD1) identical
to manganese superoxide dismutase [Arabidopsis thaliana]
gi|3273751|gb|AAC24832
Length = 231
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 342 KRVRKEYLVKTYKVDGWETATEFLEK 419
K VR EYL +KV W+ A+E EK
Sbjct: 203 KNVRPEYLKNVWKVINWKYASEVYEK 228
>At1g80770.1 68414.m09476 expressed protein
Length = 451
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 64 IDKKQISVGFIGYPNVGKSSVINTLRSKK--VCKVAPIAGETKVWQYITL-MKRIFLIDC 234
+D + ++ +G PNVGKSS++ L + K +C P + +I L +R + D
Sbjct: 249 VDLEMPTLCLVGAPNVGKSSLVRILSTGKPEICNY-PFTTRGILMGHIVLNYQRFQVTDT 307
Query: 235 PGVV 246
PG++
Sbjct: 308 PGLL 311
>At1g07630.1 68414.m00818 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 662
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 159 SSPNCW*NKSLA-VYHLNEENILD*LSGCCLSIAETDTEKVLKGVVRVELVQNPDDYIEE 335
S P+ W K + +NEE +++ L GC E D ++ + +L + IEE
Sbjct: 444 SEPDYWLAKIRQDLERINEETMMNDLEGC-----EGDQSSLVPNLSAFQLTVDHSTNIEE 498
Query: 336 VIKRVRKEY 362
++R+R E+
Sbjct: 499 EVERIRNEH 507
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +3
Query: 273 KVLKGVVRVELVQNPDDYIEEVIKRVRKEYLVKTYKVDGWETATEFLEKLAARTGKLLKK 452
K L + E +N D+I+ + K + K K+ AT ++KLA R G
Sbjct: 588 KGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRAGNEKDD 647
Query: 453 GEPD 464
E D
Sbjct: 648 DEAD 651
>At5g66470.1 68418.m08382 expressed protein
Length = 427
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 85 VGFIGYPNVGKSSVINTLRSKKVCKVA--PIAGETKVWQYITLMK-RIFLIDCPGVV 246
V +G PNVGKS++ N + +K+ V P ++ + + ++ L D PGV+
Sbjct: 132 VAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVI 188
>At4g28740.1 68417.m04110 expressed protein
Length = 347
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 279 LKGVVRVELVQNPDDYIEEVIKRVRKEY 362
L+GV R+ + P ++IEE KR KEY
Sbjct: 204 LRGVARLVICAGPAEFIEEAFKR-SKEY 230
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = -3
Query: 559 LREWYFKSLWSYIERQFPLCQSLRTILATWLTSGSPF---FNNFPVLAASFSKNSV 401
++ W K W+Y+E+ F TW S F F FPV AS N V
Sbjct: 199 IKIWSMKEFWTYVEKSF-----------TWTDDPSKFPTKFVQFPVFTASIHTNYV 243
>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 1016
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 37 LLRQFGKLHIDKKQIS-VGFIGYPNVGKSSVINTLRSKK 150
LL L ++ K I+ VG +G PN GKS+++ L K
Sbjct: 812 LLGSEAVLILELKSIADVGLVGMPNAGKSTLLGALSRAK 850
>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1170
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 4 HEPFGKGSLINLLRQFGKLHIDKKQI-SVGFIGYPNVGKSSVINTLRSK 147
H P G L KL D + +VG +G P +GK+++ TL K
Sbjct: 251 HPPPNYGIEPRLKEMEEKLDFDSLETKTVGIVGMPGIGKTTLAETLYRK 299
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 RHEPFGKGSLINLLRQFGKLHIDKKQISV-GFIGYPNVGKSSVINTLRSKKVCK 159
+HE +G + L++ KL +D ++ + G +G P +GK+++ + CK
Sbjct: 206 KHEIYGLKQRLEELKE--KLDLDCEETRILGVVGMPGIGKTTLAREIYETLRCK 257
>At3g24430.1 68416.m03066 expressed protein contains Pfam profile
PF01883: Domain of unknown function
Length = 532
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 1 RHEPFGKGSLINLLRQFGKLHI 66
R+ PFGKGS +++QFG H+
Sbjct: 355 RYYPFGKGSGSEVVKQFGIPHL 376
>At1g67460.1 68414.m07681 hypothetical protein contains Pfam domain
PF03193: Protein of unknown function, DUF258
Length = 434
Score = 27.5 bits (58), Expect = 7.7
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 70 KKQISVGFIGYPNVGKSSVINTLRS---KKVCKVAPIAGETK-VWQYITLMKRI---FLI 228
+ Q SV +G VGKSS+IN LRS + V +V+ G K + +TL+ +L
Sbjct: 247 RNQTSV-IVGPSGVGKSSLINILRSSYDQSVGEVSHRNGRGKHTTRNVTLLPLCGGGYLA 305
Query: 229 DCPGV-VYPSLKQTQRK 276
D PG + LK T++K
Sbjct: 306 DTPGFNKHKLLKVTKQK 322
>At1g48110.1 68414.m05369 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 639
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 509 KLPFYVAPEGFEVPLSKQTQDEKTVEVANEEEKITTETK 625
K P ++ + E+P + +E TV+ NEE+ +T+ K
Sbjct: 521 KKPSVISAKTEELPSKSEGNEETTVKEGNEEDTSSTQKK 559
>At1g09180.1 68414.m01025 GTP-binding protein, putative strong
similarity to SP:Q01474 GTP-binding protein SAR1B and
SP:O04834 GTP-binding protein SAR1A [Arabidopsis
thaliana]
Length = 193
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +1
Query: 58 LHIDKKQISVGFIGYPNVGKSSVINTLRSKKVCKVAP 168
L + KK+ + F+G N GK+++++ L+ +++ + P
Sbjct: 14 LGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,052,648
Number of Sequences: 28952
Number of extensions: 232653
Number of successful extensions: 748
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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