Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060690.seq
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0434 + 8403630-8405666                                           32   0.44 
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    29   3.1  
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387...    28   7.1  

>03_02_0434 + 8403630-8405666
          Length = 678

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 264 IPNRALNKMWNYSDFCLMCILLTLSEEL*MYQDV*RTCVQG-ASRRRIRMGHHIRVCFE 437
           +P+  +N++W Y +  +M ILL  SE     Q   R  VQ    + R R   H++   E
Sbjct: 459 VPHELVNEVWGYVEDVVMNILLKHSENFPQVQPSCRRAVQTLMDKARARSAQHVKELIE 517


>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 504 GLTPTQGTLVIILNHSIGMLLSFFGGPLLRRFGYRKVAAVGG 629
           GL P    +V++       L++   G ++ RFG+ K+  +GG
Sbjct: 51  GLAPRDAAIVMLSGQVADGLMTILAGEMIDRFGHFKLWHIGG 92


>07_03_1019 +
           23337543-23337697,23338315-23338384,23338555-23338740,
           23339006-23339080,23339161-23339240,23339357-23339483,
           23340608-23340667,23341926-23341976,23342048-23342206,
           23342528-23342660,23343097-23343166,23343516-23343570
          Length = 406

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 504 GLTPTQGTLVIILNHSIGMLLSFFGGPLLRRFGYRKVAAVGG 629
           GL+P+   +V++         + F G L+ RFG+ K+   GG
Sbjct: 48  GLSPSDAAVVMLSGQLADGFATIFVGELIDRFGHFKLWHAGG 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,576
Number of Sequences: 37544
Number of extensions: 324592
Number of successful extensions: 665
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)