Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060690.seq
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36417| Best HMM Match : MFS_1 (HMM E-Value=0.0037)                  40   0.002
SB_20627| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.005
SB_26686| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.028
SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14)                 32   0.45 
SB_29441| Best HMM Match : MFS_1 (HMM E-Value=1.6e-12)                 31   0.78 
SB_54679| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_58546| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)                 29   2.4  
SB_25673| Best HMM Match : MFS_1 (HMM E-Value=0.18)                    29   3.2  
SB_13105| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_28479| Best HMM Match : Exo_endo_phos (HMM E-Value=0.087)           27   9.7  
SB_20213| Best HMM Match : MFS_1 (HMM E-Value=0.023)                   27   9.7  
SB_14138| Best HMM Match : DUF1570 (HMM E-Value=6.7)                   27   9.7  
SB_11944| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)           27   9.7  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               27   9.7  
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_17308| Best HMM Match : DUF1570 (HMM E-Value=7)                     27   9.7  

>SB_36417| Best HMM Match : MFS_1 (HMM E-Value=0.0037)
          Length = 547

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +1

Query: 382 KVPPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETG 507
           K+ P+GG+GWV+     L   +VL + +SFG++F    DE G
Sbjct: 61  KLVPEGGWGWVVCATAFLAQFIVLGIHNSFGILFPFLLDEFG 102


>SB_20627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +1

Query: 391 PDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           PDGG+GW++  A  +   +VL  +++FG+++ E   E
Sbjct: 102 PDGGWGWLVCLAAFITQFIVLGTMNNFGVIYVELLQE 138


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +1

Query: 391 PDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           PDGG+GW++  A  +   +VL  +++FG+++ E   E
Sbjct: 19  PDGGWGWLVCLAAFITQFIVLGTMNNFGVIYVELLQE 55


>SB_26686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 385 VPPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           +P +GG+GW++     + N +V  + +SFG+V+    DE
Sbjct: 32  LPVEGGWGWIVCAGTFIVNFIVFGIHNSFGVVYVNLLDE 70


>SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14)
          Length = 499

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 394 DGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETG 507
           DG   WVI     L N+++   I +FG++F    DE G
Sbjct: 28  DGAMAWVICLLATLANLLIWGCILTFGILFPVLLDEFG 65


>SB_29441| Best HMM Match : MFS_1 (HMM E-Value=1.6e-12)
          Length = 473

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 394 DGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETG 507
           DG   WVI     L N++    I +FG++F    DE G
Sbjct: 429 DGAMAWVICLLATLANLLTCGCIITFGILFPVLLDEFG 466


>SB_54679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 391 PDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETG 507
           P+GG GWV+  A       V  +  S+G+++    DE G
Sbjct: 20  PEGGRGWVVCAAAFFAMFTVFGIHISYGVIYANLVDEHG 58


>SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 504 RLIKRFLEHQTETTNEGKNDYIIQSIRECDDPSVSSVWRHLVRRCVRHLG 355
           R+++R L  +T    E K D+I  ++ E D PS  + W H  R  +  LG
Sbjct: 257 RVVERSLNRRTNE-EERKQDFI--NMDENDAPSFDNEWNHRTRTAMHSLG 303


>SB_58546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 394 DGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           D G+ WV+  A      +V   I SFG++F    +E
Sbjct: 2   DAGWAWVVCAASFFIQFIVFGTIQSFGIIFVSLLNE 37


>SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)
          Length = 607

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 394 DGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           DGGY WV+ FA  +  ++ +   +  G++F    DE
Sbjct: 34  DGGYAWVVCFAAFVILLITVGQQNCSGIIFVALMDE 69


>SB_25673| Best HMM Match : MFS_1 (HMM E-Value=0.18)
          Length = 634

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 394 DGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFD 498
           D  + W++  + AL+N +V+ L  S+G++F    D
Sbjct: 252 DCAWSWLVCLSAALSNTIVVGLSFSYGVLFPVLLD 286


>SB_13105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 504 RLIKRFLEHQTETTNEGKNDYIIQSIRE 421
           R I RFL+ +T +  EG N YI + I E
Sbjct: 34  RCILRFLKEKTPSAYEGNNSYIAKYIEE 61


>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 394 DGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           DGG  W++  +  L  +V++ + + FGL++ +   E
Sbjct: 14  DGGVSWLVVLSSFLQQLVIMGVHNVFGLLYIDLLAE 49


>SB_28479| Best HMM Match : Exo_endo_phos (HMM E-Value=0.087)
          Length = 466

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 464 LMRGRTTTLFKAYANVMTHP 405
           L RGR+ TL  AYA  MT+P
Sbjct: 67  LGRGRSATLISAYAPTMTNP 86


>SB_20213| Best HMM Match : MFS_1 (HMM E-Value=0.023)
          Length = 247

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 394 DGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           DG   W + FA  + +V+++    ++G +F    DE
Sbjct: 32  DGSRAWFVCFAAFVVSVLIISCSQTYGTIFPVLLDE 67


>SB_14138| Best HMM Match : DUF1570 (HMM E-Value=6.7)
          Length = 169

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 464 LMRGRTTTLFKAYANVMTHP 405
           L RGR+ TL  AYA  MT+P
Sbjct: 117 LGRGRSATLISAYAPTMTNP 136


>SB_11944| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
          Length = 225

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 464 LMRGRTTTLFKAYANVMTHP 405
           L RGR+ TL  AYA  MT+P
Sbjct: 90  LGRGRSATLISAYAPTMTNP 109


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +1

Query: 391 PDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           P+GG+GW++  A  +    +L + ++ G+++     E
Sbjct: 794 PEGGWGWLVCLAGFIAQFTILGIQNNTGILYTTLLTE 830


>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 504 GLTPTQGTLVIILNHSIGML 563
           GLTP QG ++++LN + G +
Sbjct: 553 GLTPNQGNVIVLLNGTFGAI 572


>SB_17308| Best HMM Match : DUF1570 (HMM E-Value=7)
          Length = 140

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 464 LMRGRTTTLFKAYANVMTHP 405
           L RGR+ TL  AYA  MT+P
Sbjct: 88  LGRGRSATLISAYAPTMTNP 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,879,867
Number of Sequences: 59808
Number of extensions: 423222
Number of successful extensions: 2984
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2982
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)