Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060690.seq
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned expre...    39   0.003
U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned expre...    39   0.003
U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned expre...    39   0.003
Z78545-2|CAB01766.1|  596|Caenorhabditis elegans Hypothetical pr...    39   0.003
AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical ...    35   0.056
AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical ...    35   0.056
AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical ...    34   0.074
U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    33   0.17 
Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical pr...    32   0.30 
U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    27   8.5  
AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical ...    27   8.5  
AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned
           expression site protein22, isoform c protein.
          Length = 710

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +1

Query: 391 PDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           PDGGYGWVI FA  ++N+VV  + ++F   F++++ E
Sbjct: 70  PDGGYGWVIVFAAFMSNLVVDGISTAFS-EFKQSYKE 105


>U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned
           expression site protein22, isoform a protein.
          Length = 677

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +1

Query: 391 PDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           PDGGYGWVI FA  ++N+VV  + ++F   F++++ E
Sbjct: 15  PDGGYGWVIVFAAFMSNLVVDGISTAFS-EFKQSYKE 50


>U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned
           expression site protein22, isoform b protein.
          Length = 777

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +1

Query: 391 PDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           PDGGYGWVI FA  ++N+VV  + ++F   F++++ E
Sbjct: 70  PDGGYGWVIVFAAFMSNLVVDGISTAFS-EFKQSYKE 105


>Z78545-2|CAB01766.1|  596|Caenorhabditis elegans Hypothetical
           protein M03B6.2 protein.
          Length = 596

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +1

Query: 388 PPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAF 495
           PPDGGYGW I  A  L N++V  +I + G + Q A+
Sbjct: 33  PPDGGYGWAIVAASFLLNMIVDGVIFTVGKILQPAW 68


>AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical
           protein C01B4.9 protein.
          Length = 571

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 388 PPDGGYGWVITFAYALNNVVVLPLISSFGLV 480
           PPDGGYGWV+  A  L N+ V  +I + G +
Sbjct: 39  PPDGGYGWVVVAASFLVNMAVDGVIYTCGKI 69


>AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical
           protein Y19D10A.12 protein.
          Length = 544

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 388 PPDGGYGWVITFAYALNNVVVLPLISSFGLV 480
           PPDGGYGWV+  A  L N+ V  +I + G +
Sbjct: 39  PPDGGYGWVVVAASFLVNMAVDGVIYTCGKI 69


>AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical
           protein C10E2.6 protein.
          Length = 594

 Score = 34.3 bits (75), Expect = 0.074
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 385 VPPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           +PPDGG+GWV+       +V     + SFG++ +   +E
Sbjct: 16  LPPDGGWGWVVVLGSFFVHVFADGFVYSFGVLVETLMEE 54


>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 385 VPPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDE 501
           +PPDGG+GWV+       +V     + SFG++ ++   E
Sbjct: 13  LPPDGGWGWVVVIGSFFIHVFADGFVYSFGILAEKLMIE 51


>Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical
           protein C49F8.2 protein.
          Length = 771

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 361 MSNAPAYKVPPDGGYGWVITFAYALNNVVVLPLISSFGLVF 483
           ++  P YK   DGGYGW++  A  L + V       FG+VF
Sbjct: 60  LTERPVYK---DGGYGWLVVLASFLMHAVCDGASFCFGIVF 97


>U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical
           protein C03B1.13 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 516 TQGTLVIILNHSIGMLLSF---FGGPLLRRFGYRKVAAVG 626
           T  T  I+++  +G++L F   FG  L  RFG RK+  VG
Sbjct: 249 TTDTFTILVSDGLGLVLFFASLFGIYLADRFGRRKLVLVG 288


>Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical protein
            F14F4.3b protein.
          Length = 1427

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -1

Query: 518  RRSQPVSSN-ASWNTR--PKLLMRGRTTTLFKAYANVMTHPYPPSGGTLYAGALDI 360
            R+S P++ N  ++  +   K+ + GRT +   + AN++   YP + GT+Y   +DI
Sbjct: 1127 RKSHPLALNDITFEIKGGEKVGIIGRTGSGKSSLANLIFRLYPVTNGTIYIDGVDI 1182


>Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical protein
            F14F4.3a protein.
          Length = 1400

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -1

Query: 518  RRSQPVSSN-ASWNTR--PKLLMRGRTTTLFKAYANVMTHPYPPSGGTLYAGALDI 360
            R+S P++ N  ++  +   K+ + GRT +   + AN++   YP + GT+Y   +DI
Sbjct: 1100 RKSHPLALNDITFEIKGGEKVGIIGRTGSGKSSLANLIFRLYPVTNGTIYIDGVDI 1155


>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 91  YSPIVISVRV*FNINSAKNSN-HK 159
           Y PIVIS+R   N+ SA+NS  HK
Sbjct: 200 YIPIVISIRKFVNLQSAQNSKPHK 223


>AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical
            protein F14F4.3b protein.
          Length = 1427

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -1

Query: 518  RRSQPVSSN-ASWNTR--PKLLMRGRTTTLFKAYANVMTHPYPPSGGTLYAGALDI 360
            R+S P++ N  ++  +   K+ + GRT +   + AN++   YP + GT+Y   +DI
Sbjct: 1127 RKSHPLALNDITFEIKGGEKVGIIGRTGSGKSSLANLIFRLYPVTNGTIYIDGVDI 1182


>AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical
            protein F14F4.3a protein.
          Length = 1400

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -1

Query: 518  RRSQPVSSN-ASWNTR--PKLLMRGRTTTLFKAYANVMTHPYPPSGGTLYAGALDI 360
            R+S P++ N  ++  +   K+ + GRT +   + AN++   YP + GT+Y   +DI
Sbjct: 1100 RKSHPLALNDITFEIKGGEKVGIIGRTGSGKSSLANLIFRLYPVTNGTIYIDGVDI 1155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,938,111
Number of Sequences: 27780
Number of extensions: 318873
Number of successful extensions: 717
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)