Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060689.seq
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.6  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.9  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.6  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 539 NNVSIHKENHYNHWQHMAH 595
           NN + + +NH++H  H  H
Sbjct: 313 NNAATNNQNHHHHAGHHIH 331


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 20/85 (23%), Positives = 28/85 (32%)
 Frame = +1

Query: 142 WICRR*SYVSKR*YLPQCWAWIKPVSSKTCPSCTSA*ARAEQPFHYLQGVPFSMSKELQM 321
           W+     YVS R      W W      +TC   +S  +R    +  L+       K   +
Sbjct: 12  WLYLTAIYVSSRKSDSGIWYWQCNTDEETCTRISSTVSRNTDTYPTLETCRLVCGKYGAL 71

Query: 322 SANKDSYAREISDLLAFLTNKITMN 396
                S  +  S LL F    I  N
Sbjct: 72  WPQPTSVTKISSTLLKFPYRSIKFN 96


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 483 LIITKCYYFHCTLALFYNTSF 421
           LII  C Y+ C   + + T F
Sbjct: 292 LIILLCIYYFCRAFIIFPTHF 312


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = -1

Query: 147 NPSSDFGPGIGGVSSSTGDDLLFPKN 70
           NP S+  PG G     +   + + K+
Sbjct: 11  NPDSELFPGFGSTCGGSSSSMAYLKS 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,649
Number of Sequences: 336
Number of extensions: 3186
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)