Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060689.seq
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   4.0  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   7.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.3  
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    25   9.3  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 162 GSTTTNPSSDFGPGIGGVSSSTGDD 88
           G    NP++ F PG  G SS   DD
Sbjct: 354 GFDCINPANPFSPGYSGKSSMKSDD 378


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 165 VGSTTTNPSSDFGPGIGGVSSSTGDDLL-FPKNDENILLMNNIFY 34
           VG T      D  P I GVS  +G      PKND N+L  N I Y
Sbjct: 710 VGLTPILSLIDGQPSIFGVSGYSGAGTKPSPKNDLNVLTNNLIPY 754


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 98  VEDETPPIPGPKSDDGFVVVDPTS 169
           V+DE PP P P+S D    V  TS
Sbjct: 345 VDDEIPPFPFPESLDSVAYVLYTS 368


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 94  TS*RRDTADTWPEVRRWIC 150
           +S R +T  T+P +R WIC
Sbjct: 109 SSGRFNTQSTFPTIRNWIC 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,450
Number of Sequences: 5004
Number of extensions: 51836
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)