Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060689.seq
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195...    29   2.4  
11_06_0168 + 20868696-20870072                                         28   7.2  
06_01_0484 + 3439365-3439474,3439574-3439699,3439700-3439851,344...    28   7.2  
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185...    27   9.6  

>02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,
            1957954-1958041,1958143-1958324,1958508-1958644,
            1958790-1958856,1959132-1959246,1959390-1959501,
            1960420-1960495,1960576-1960758,1961166-1961326,
            1961463-1961532,1962721-1962928,1963015-1963304,
            1963388-1963509,1963605-1963749,1964040-1964113,
            1964464-1964911
          Length = 1274

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -1

Query: 156  TTTNPSSDFGPGIGGVSSSTGDDLLFP-KN--DENILLMNNIF 37
            TT + SSD  PG G  +S     L FP KN  DE+++ ++ +F
Sbjct: 1213 TTESESSDDTPGSGSPTSEQSPKLRFPSKNVDDEDLIAVSEVF 1255


>11_06_0168 + 20868696-20870072
          Length = 458

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 465 YYFHCTLALFYNTSFNREIIFIIVH 391
           Y+FHC   +FY+  F R  I +++H
Sbjct: 216 YFFHCKAFVFYD-KFVRSYIVVLIH 239


>06_01_0484 +
           3439365-3439474,3439574-3439699,3439700-3439851,
           3440129-3440238,3440872-3440957,3441463-3441573,
           3441679-3441799
          Length = 271

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 289 VPFSMSKELQMSANKDSYAREISDLLAFLTNKITMNNYEYDFSVERS 429
           +P      L +S + D YA EI+       NKI    +E D SV+ S
Sbjct: 209 IPPHTGSMLWLSVHDDEYALEINSGKRSRDNKIKTEQHEQDHSVKSS 255


>03_01_0238 +
           1854070-1854344,1854621-1854712,1854852-1855045,
           1855529-1855568,1855734-1855815,1856972-1857049,
           1857144-1857269,1857544-1857665,1858018-1858057,
           1858250-1858324,1858414-1858585
          Length = 431

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 235 WGRSLRIRA*SRPNTGVNTTSWRRRINDDKSIVGLRARYRR 113
           WG +L   A     T  + ++W R   DD+   G R R+ R
Sbjct: 132 WGINLLDEAVKESGTNEDGSTWYRESGDDRGDNGYRCRWAR 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,298
Number of Sequences: 37544
Number of extensions: 302616
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)