Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060689.seq
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50021| Best HMM Match : rve (HMM E-Value=0.043)                     31   0.60 
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)                 30   1.8  
SB_540| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.2  
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0)                      28   5.6  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_30170| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)                     27   9.8  

>SB_50021| Best HMM Match : rve (HMM E-Value=0.043)
          Length = 662

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 66  HRFSEKGDHHQLKTRHRRYLARSPTMDLSSLILRLQEVVFT--PVLGLD 206
           H F+   DH  L++ H ++L  +P   L  +ILRLQ   FT   +LG D
Sbjct: 249 HSFTVHSDHKPLESIHLKHLTSAPPR-LQRMILRLQPYDFTIKYILGKD 296


>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
          Length = 1105

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 66  HRFSEKGDHHQLKTRHRRYLARSPTMDLSSLILRLQEVVFT 188
           H F+   DH  L++ H ++L  +P   L  ++LRLQ   FT
Sbjct: 678 HSFTVYSDHKPLESIHLKHLTSAPPR-LQRMLLRLQPYDFT 717


>SB_540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 48  SLTKCFHRFSEKGDHHQLKTRHRRYLARSPTMD 146
           SL  C H  S K      KT+  R  +RSPT D
Sbjct: 30  SLEACSHHHSSKSHKKSKKTKKHRKRSRSPTPD 62


>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 489 IVLIITKCY--YFHCTLALFYNTSFNREIIFIIVH 391
           IV ++  CY  YF  T  L+Y   FN +++ +++H
Sbjct: 432 IVALLFACYTFYFIITPILYYQVGFNGKLLEVLLH 466


>SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 645

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 192 VLGLDQARILKDLPQLHLCLGQ---SRATVSLSSRSPIFDVKGTTNV 323
           ++GL+Q R  K+L  + LC+G    S   V LS+ S  FD   T N+
Sbjct: 19  LIGLNQLRQRKELCDVELCVGNVQISAHRVVLSACSAYFDAMFTGNL 65


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 548  IHYLSVD*INYTNKYMFEDKLY*LSQNVII 459
            IH ++V  +NYTN  ++   L+  SQN+ I
Sbjct: 1196 IHTMTVQHLNYTNHMLYAYDLWEQSQNIFI 1225


>SB_30170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 217 IRA*SRPNTGVNTT--SWRRRINDDKSIVGLRARYRRCLVFN 98
           IR    P T  NTT  S   R   D+S+V  RA+Y R LV N
Sbjct: 21  IRPYLSPTTAHNTTMPSPNNRTQYDRSLVNNRAQYDRSLVNN 62


>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 1007

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 187 VNTTSWRRRINDDKSIVGLRAR 122
           +NTT WRRR  D+ S  G+R R
Sbjct: 686 LNTTIWRRRCFDEWSRSGIRLR 707


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,052,984
Number of Sequences: 59808
Number of extensions: 372970
Number of successful extensions: 938
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)