Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060689.seq
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   1.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.8  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 304 SKELQMSANKDSYAREISDLLAFLTNKITMNNYEYDFS 417
           SKE      +   +RE   + +   N I  NNY+Y+++
Sbjct: 62  SKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYN 99


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 304 SKELQMSANKDSYAREISDLLAFLTNKITMNNYEYDFS 417
           SKE      +   +RE   + +   N I  NNY+Y+++
Sbjct: 63  SKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYN 100


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 304 SKELQMSANKDSYAREISDLLAFLTNKITMNNYEYDFS 417
           SKE      +   +RE   + +   N I  NNY+Y+++
Sbjct: 63  SKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYN 100


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 304 SKELQMSANKDSYAREISDLLAFLTNKITMNNYEYDFS 417
           SKE      +   +RE   + +   N I  NNY+Y+++
Sbjct: 63  SKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYN 100


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 304 SKELQMSANKDSYAREISDLLAFLTNKITMNNYEYDFS 417
           SKE      +   +RE   + +   N I  NNY+Y+++
Sbjct: 63  SKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYN 100


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 304 SKELQMSANKDSYAREISDLLAFLTNKITMNNYEYDFS 417
           SKE      +   +RE   + +   N I  NNY+Y+++
Sbjct: 62  SKERSRDRAERERSREPKIISSLSNNTIHNNNYKYNYN 99


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 637 MFKQK*XQ*PIYHQVCHMLPMIVMVFFVDGYI 542
           M K+   + P+Y   C +  +I MVF    YI
Sbjct: 195 MLKENMPEFPLYQLSCILFFLIPMVFIAVLYI 226


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 536 INNVSIHKENHYNHWQH 586
           ++N +IH  N+YN++ +
Sbjct: 307 LSNKTIHNNNNYNNYNN 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,681
Number of Sequences: 438
Number of extensions: 3442
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)