Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060689.seq
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containi...    27   8.0  
At3g50170.1 68416.m05485 hypothetical protein contains Pfam prof...    27   8.0  

>At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1155

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 337 NPC*QTFVVPLTSKMGLLEDSETV 266
           N C  T ++ L SK+G LEDS TV
Sbjct: 816 NKCITTALLDLYSKLGRLEDSSTV 839


>At3g50170.1 68416.m05485 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 541

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 36  KIYYSLTKCFHRFSEKGDHHQLKTRHRRYLARSPTMDLSSLILRL 170
           K+   L K      +KG+ H L    R  L  SPT +  SL+ RL
Sbjct: 299 KLMNWLEKSLDTLGDKGELHCLDVFRRSLLQSSPTPNTRSLLKRL 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,279,123
Number of Sequences: 28952
Number of extensions: 258696
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)