Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060688.seq
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 133 2e-32
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 102 4e-23
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 27 2.3
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 27 2.3
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 27 2.3
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 4.0
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 6.9
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 25 6.9
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 9.1
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 25 9.1
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 25 9.1
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 9.1
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 133 bits (322), Expect = 2e-32
Identities = 72/125 (57%), Positives = 80/125 (64%)
Frame = +1
Query: 256 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 435
LGLLK KLAK R+QLLEP+ K G KGEGFDVLKSGDARVA IGFPSVGK
Sbjct: 27 LGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGDARVAFIGFPSVGKSTLLSAITKTK 86
Query: 436 XEAASYEFTTLTCIPGVIEYRGANNNC*ICXXXXXXXXXXXXXXXQGIAVARTADLVLMM 615
ASYEFTTLT IPGV+EY GA + Q ++ ARTADL+LM+
Sbjct: 87 SATASYEFTTLTAIPGVLEYDGAEIQM-LDLPGIIEGASQGRGGRQAVSAARTADLILMV 145
Query: 616 LDATK 630
LDATK
Sbjct: 146 LDATK 150
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 224 RTQKNKATEY 253
RTQKNKATEY
Sbjct: 16 RTQKNKATEY 25
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 102 bits (245), Expect = 4e-23
Identities = 55/126 (43%), Positives = 70/126 (55%)
Frame = +1
Query: 256 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 435
LG+LKAKLAK + +L+ P+ GG G GFDV ++G V IGFPSVGK
Sbjct: 28 LGMLKAKLAKLKRELITPTGGGGGGGLGFDVARTGIGTVGFIGFPSVGKSTLMTQLTGTR 87
Query: 436 XEAASYEFTTLTCIPGVIEYRGANNNC*ICXXXXXXXXXXXXXXXQGIAVARTADLVLMM 615
EAA+YEFTTLT +PGV++Y GA Q I VART +L+ ++
Sbjct: 88 SEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGIIEGAKDGRGRGKQVITVARTCNLIFIV 147
Query: 616 LDATKP 633
LD KP
Sbjct: 148 LDVLKP 153
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +3
Query: 162 DKLAESWGF*RKYQKLRKKSR-EHRKIKRLN 251
D + S+G ++Y + +KK R E+R+++R+N
Sbjct: 41 DNMKASFGSSKRYDERQKKKRSEYRRLRRIN 71
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 495 SRCQQQLLDLPGIIEGAAQGQ 557
S Q +L D+PGII+GA+ G+
Sbjct: 287 SSFQYRLADIPGIIKGASDGK 307
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +1
Query: 370 VALIGFPSVGKXXXXXXXXXXXXEAASYEFTTL 468
+ L+G P+ GK + YEFTT+
Sbjct: 239 IGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTI 271
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 184 PHDSASLSDNYLPRSQLIDNVFRL 113
PHDS+ LS NY P S L F +
Sbjct: 438 PHDSSMLSSNYRPPSALSPRNFNV 461
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 4.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1
Query: 19 NYILDRH*IKFKNLYSFLV 75
N++L+ H ++F +LY F+V
Sbjct: 295 NFVLENHLVRFSSLYIFIV 313
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -3
Query: 356 DFSTSKPSPLSPPFFEGSSNCDLYFANLAFKRPKDIQSLYFSVFSRFLSQF 204
DFSTS P P P ++ DL LA + + ++Y V S + F
Sbjct: 22 DFSTSSPVPCLNPLSHENNRIDLIRDLLASLSKEGVVAVYNHVRSLLFTDF 72
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 361 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR 498
+ R L+ G+P+VGK + Y FTT + G +Y+
Sbjct: 167 NTRTLLVCGYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDYK 213
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 114 YLIKTEFTVSIISY*KTIQILKFYLMPIQNIIM 16
+L K E I+ +T+QILK Y PI NI M
Sbjct: 53 HLTKAEEVPDILM--QTVQILKSYSTPIANIEM 83
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 422 RVDKRVDLPTEGK-PIKATRASPDFSTSKPSPLSPP 318
R+ LPT P+K + P + ++PSPLS P
Sbjct: 364 RMSSITSLPTASFCPVKHGVSPPSLAGNQPSPLSSP 399
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 633 WFGSIQHH*YQVCSTCYGYTLSSSTF 556
W+ ++++ Y +C CY SS+F
Sbjct: 204 WYHNLKNKKYDICPNCYKQGRFSSSF 229
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -3
Query: 356 DFSTSKPSPLSPPFFEGSSNCDLYFANLAFKRPKDIQSLYFSVFSRFLSQFL 201
D S S P LS S D YF A+ RP I+ + +F LS +L
Sbjct: 248 DNSESLPDILSITLDNLSHPTDEYFEAKAYFRPSAIERNWPKIFVTLLSAWL 299
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 415 IKGSTYPQKESLSKQLEHHQTLVHRNL 335
+K S Q L++++ HH+ L+H N+
Sbjct: 59 LKSSCRKQAIILAREIHHHRRLLHPNI 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,975
Number of Sequences: 5004
Number of extensions: 43379
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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