Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060688.seq
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 122 2e-28
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 116 2e-26
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 29 3.1
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 29 3.1
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 28 7.1
01_06_0191 - 27334412-27335155 28 7.1
10_08_1008 - 22222051-22222377,22222479-22222640,22223179-222233... 27 9.4
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 27 9.4
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 122 bits (294), Expect = 2e-28
Identities = 67/128 (52%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Frame = +1
Query: 256 LGLLKAKLAKYRSQLLEPSKKGGD--KGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXX 429
LGLLKAKLAK R +LL P+ KGG GEGFDV KSGDARV L+GFPSVGK
Sbjct: 38 LGLLKAKLAKLRRELLTPTSKGGGGGAGEGFDVTKSGDARVGLVGFPSVGKSTLLNKLTG 97
Query: 430 XXXEAASYEFTTLTCIPGVIEYRGANNNC*ICXXXXXXXXXXXXXXXQGIAVARTADLVL 609
E A+YEFTTLTCIPGVI Y+GA Q I+ ART +++L
Sbjct: 98 TFSEVAAYEFTTLTCIPGVIMYKGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNVIL 157
Query: 610 MMLDATKP 633
++LDA KP
Sbjct: 158 IVLDAIKP 165
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 116 bits (278), Expect = 2e-26
Identities = 64/125 (51%), Positives = 75/125 (60%)
Frame = +1
Query: 256 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 435
LG LKAK+AK R+QLLEP K G+GF+V K G RVALIGFPSVGK
Sbjct: 27 LGQLKAKIAKLRTQLLEPPKGSTGGGDGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTH 86
Query: 436 XEAASYEFTTLTCIPGVIEYRGANNNC*ICXXXXXXXXXXXXXXXQGIAVARTADLVLMM 615
EAASYEFTTLTCIPG+I+Y Q IAVA+++DLVLM+
Sbjct: 87 SEAASYEFTTLTCIPGIIQYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDLVLMV 146
Query: 616 LDATK 630
LDA+K
Sbjct: 147 LDASK 151
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 364 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEY 495
A V L+G P+ GK E A Y FTTL G + Y
Sbjct: 340 ADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSLTY 383
>10_03_0019 -
7123502-7123673,7124145-7124226,7124228-7124394,
7124569-7125182
Length = 344
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 346 HRNLHLCLHLFLKVPATVIYI 284
HR+LHL LHL L PAT I +
Sbjct: 34 HRHLHLDLHLPLPPPATAILV 54
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 418 SIKGSTYPQKESLSKQLEHH 359
++KG+T PQ E + Q++HH
Sbjct: 606 NLKGTTQPQPERVKNQVDHH 625
>01_06_0191 - 27334412-27335155
Length = 247
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -3
Query: 476 IHVSVVNS*LAASECV*VRVDKRVDLPTEGKPIKATRASPDFSTSKP 336
+ V+V N+ A VDK V LP E +KA A+P ST+KP
Sbjct: 158 VEVTVTNALSAVKPLAVYSVDK-VLLPFELFGVKAPAAAPTASTAKP 203
>10_08_1008 -
22222051-22222377,22222479-22222640,22223179-22223310,
22224556-22224608,22224713-22225256
Length = 405
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 398 PTEGKPIKATRASPDFSTSKPSPLSPPFFEGSSN 297
P E + ++ A P +T P+P++ P EG+S+
Sbjct: 312 PVETRKVEPMSAPPQMATYVPAPVASPPSEGTSS 345
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 474 YTWSYRISRCQQQLLDLPGIIEGAA 548
+ WS+R+S +QL ++PG+ E A
Sbjct: 86 HAWSFRLSDALKQLREVPGLAERMA 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,782,999
Number of Sequences: 37544
Number of extensions: 252777
Number of successful extensions: 758
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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