Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060688.seq
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)                  140   9e-34
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)              97   1e-20
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   70   2e-12
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)               31   0.78 
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)                   28   5.5  
SB_20148| Best HMM Match : Cu_bind_like (HMM E-Value=3)                28   7.3  

>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
          Length = 365

 Score =  140 bits (339), Expect = 9e-34
 Identities = 78/126 (61%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
 Frame = +1

Query: 256 LGLLKAKLAKYRSQLLEPSKKGGD-KGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXX 432
           LGLLKAKLAKYR+QLLEP+K     KG+GFDV+KSGDARVALIGFPSVGK          
Sbjct: 27  LGLLKAKLAKYRAQLLEPAKGSSSAKGDGFDVMKSGDARVALIGFPSVGKSTLLTKLTQT 86

Query: 433 XXEAASYEFTTLTCIPGVIEYRGANNNC*ICXXXXXXXXXXXXXXXQGIAVARTADLVLM 612
               ASYEFTTLTCIPGVI Y GAN                     Q IAVARTADLVLM
Sbjct: 87  QSACASYEFTTLTCIPGVINYNGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLM 146

Query: 613 MLDATK 630
           MLDA+K
Sbjct: 147 MLDASK 152


>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
          Length = 141

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 51/75 (68%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +1

Query: 256 LGLLKAKLAKYRSQLLEPSKKGGD-KGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXX 432
           LGLLKAKLAKYR+QLLEP+K     KG+GFDV+KSGDARVALIGFPSVGK          
Sbjct: 27  LGLLKAKLAKYRAQLLEPAKGSSSAKGDGFDVMKSGDARVALIGFPSVGKSTLLTKLTQT 86

Query: 433 XXEAASYEFTTLTCI 477
               ASYEFTTLT I
Sbjct: 87  QSACASYEFTTLTGI 101


>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/55 (56%), Positives = 37/55 (67%)
 Frame = +1

Query: 340 FDVLKSGDARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGA 504
           FDV K+GDAR+  +GFPSVGK            E A+YEFTTLT +PGVI Y+GA
Sbjct: 41  FDVAKTGDARIGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGA 95



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 510 QLLDLPGIIEGA 545
           QLLDLPGIIEGA
Sbjct: 98  QLLDLPGIIEGA 109


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 507  QQLLDLPGIIEGAAQGQR*RKTGYSRSTYCRLGINDAGCYQTI 635
            QQL+ +P +I  A Q +   K+ YS S   R GI++   Y T+
Sbjct: 1153 QQLMQVPQVIIKAGQNEEKGKSNYSASHALRGGISETNSYNTL 1195


>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
          Length = 255

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 379 IGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEY 495
           +GFP+ GK              A+Y FTTL    G++EY
Sbjct: 1   VGFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEY 39


>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 374 ATRASPDF--STSKPSPLSPPFFEGSSNCD 291
           + +ASP F  S S+ SP SPP   GSS  D
Sbjct: 221 SNKASPRFAISPSRDSPTSPPLRPGSSGSD 250


>SB_20148| Best HMM Match : Cu_bind_like (HMM E-Value=3)
          Length = 428

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 391 KESLSKQLEHHQTLVHRNLHLCLHLFLKVPATVI 290
           K +++KQ++  +T  HR+L L   L   VPAT +
Sbjct: 38  KHAIAKQVKRAKTGFHRSLTLAHKLLYAVPATPV 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,822
Number of Sequences: 59808
Number of extensions: 297889
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)