Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060688.seq
         (637 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY428512-1|AAR89530.1|  420|Anopheles gambiae EKN1 protein.            26   0.87 
CR954257-13|CAJ14164.1|  420|Anopheles gambiae predicted protein...    26   1.1  
Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.        24   3.5  

>AY428512-1|AAR89530.1|  420|Anopheles gambiae EKN1 protein.
          Length = 420

 Score = 26.2 bits (55), Expect = 0.87
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -3

Query: 398 PTEGKPIKATRASPDFSTSKPSPLSPPFFEGSSNCDLYFANLAFKRPK 255
           P +G     T+ S D     P P SPP    S   ++ F+   F  PK
Sbjct: 201 PPKGAGATGTQHS-DQQQEPPRPSSPPAIRRSGTLEVTFSERTFVTPK 247


>CR954257-13|CAJ14164.1|  420|Anopheles gambiae predicted protein
           protein.
          Length = 420

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -3

Query: 398 PTEGKPIKATRASPDFSTSKPSPLSPPFFEGSSNCDLYFANLAFKRPK 255
           P +G     T+ S D     P P SPP    S   ++ F+   F  PK
Sbjct: 201 PPKGAGATGTQHS-DQQQELPRPSSPPAIRRSGTLEVTFSERTFVTPK 247


>Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.
          Length = 91

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 219 SREHRKIKRLNILGSLKSQISKI 287
           +R HRK+ R NI G+ K  I ++
Sbjct: 16  ARRHRKVLRDNIQGTTKPAIRRL 38


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,229
Number of Sequences: 2352
Number of extensions: 10933
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)