Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060688.seq
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-12|AAR25659.1|  366|Caenorhabditis elegans Hypothetical p...   146   9e-36
Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical pr...   118   5e-27
AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical...   118   5e-27
Z93385-2|CAB07637.1|  358|Caenorhabditis elegans Hypothetical pr...    34   0.098
AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical...    30   1.6  
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    30   1.6  
AL132895-4|CAC14401.1|  333|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    27   8.5  

>L14745-12|AAR25659.1|  366|Caenorhabditis elegans Hypothetical
           protein C02F5.3 protein.
          Length = 366

 Score =  146 bits (355), Expect = 9e-36
 Identities = 77/125 (61%), Positives = 84/125 (67%)
 Frame = +1

Query: 256 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 435
           LGLLKAKLAKYR QLLEP+ KGG KGEGFDV+KSGDARVA++GFPSVGK           
Sbjct: 27  LGLLKAKLAKYRQQLLEPTGKGGAKGEGFDVMKSGDARVAMVGFPSVGKSTLLSSMTSTH 86

Query: 436 XEAASYEFTTLTCIPGVIEYRGANNNC*ICXXXXXXXXXXXXXXXQGIAVARTADLVLMM 615
            EAA YEFTTLTCIPGVI Y GAN                     Q I+VA+TADL+LMM
Sbjct: 87  SEAAGYEFTTLTCIPGVISYNGANIQLLDLPGIIEGASQGKGRGRQVISVAKTADLILMM 146

Query: 616 LDATK 630
           LDA K
Sbjct: 147 LDAGK 151


>Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score =  118 bits (283), Expect = 5e-27
 Identities = 62/126 (49%), Positives = 72/126 (57%)
 Frame = +1

Query: 256 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 435
           LG+LKAKLAK R  L+ P   GG  GEGFDV K+GDAR+  +GFPSVGK           
Sbjct: 27  LGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLCNLAGVF 86

Query: 436 XEAASYEFTTLTCIPGVIEYRGANNNC*ICXXXXXXXXXXXXXXXQGIAVARTADLVLMM 615
            E A+YEFTTLT +PGVI Y+GA                      Q IAVART  L+LM+
Sbjct: 87  SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCSLILMV 146

Query: 616 LDATKP 633
           LD  KP
Sbjct: 147 LDVMKP 152


>AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score =  118 bits (283), Expect = 5e-27
 Identities = 62/126 (49%), Positives = 72/126 (57%)
 Frame = +1

Query: 256 LGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGKXXXXXXXXXXX 435
           LG+LKAKLAK R  L+ P   GG  GEGFDV K+GDAR+  +GFPSVGK           
Sbjct: 27  LGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLCNLAGVF 86

Query: 436 XEAASYEFTTLTCIPGVIEYRGANNNC*ICXXXXXXXXXXXXXXXQGIAVARTADLVLMM 615
            E A+YEFTTLT +PGVI Y+GA                      Q IAVART  L+LM+
Sbjct: 87  SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCSLILMV 146

Query: 616 LDATKP 633
           LD  KP
Sbjct: 147 LDVMKP 152


>Z93385-2|CAB07637.1|  358|Caenorhabditis elegans Hypothetical
           protein M01E5.2 protein.
          Length = 358

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 331 GEGFDVLKSGDARV----ALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEY 495
           GEG +++   + RV     L+GFP+ GK            + ASY FTTL    GV+ Y
Sbjct: 174 GEGEELIYDVEMRVMATAGLVGFPNAGKSSLLRAISRAKPKVASYPFTTLHPHIGVVFY 232


>AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical
           protein T07A9.9b protein.
          Length = 633

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 376 LIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR 498
           L GFP+VGK            E   Y FTT     G ++YR
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDYR 214


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 376 LIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR 498
           L GFP+VGK            E   Y FTT     G ++YR
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDYR 214


>AL132895-4|CAC14401.1|  333|Caenorhabditis elegans Hypothetical
           protein Y59A8A.4 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -1

Query: 385 SLSKQLEH-HQTLVHR-NLHLCLHLFLKVPATVIYILLIWLLRDPRIFSRFIFLCS 224
           SLSK   H H+  +   NL + + L +    T+I +L   ++ + + F+  +++CS
Sbjct: 226 SLSKHTVHMHKAFIKALNLQIAIPLIILFAPTIIGVLFRTIISNHQGFNNVVYICS 281


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 398 PTEGKPIKATRASPDFSTSK-PSPLSPP 318
           P EG P  A   +P  STS+ P PL PP
Sbjct: 24  PREGAPPPAPPLAPGASTSQAPPPLQPP 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,449,910
Number of Sequences: 27780
Number of extensions: 238505
Number of successful extensions: 787
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)