Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060688.seq
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.81 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.7  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 107 LKQNSQYQSFHTKKLYRFLNFI 42
           +  N+ Y +++ KKLY  +N+I
Sbjct: 312 IHNNNNYNNYNNKKLYYNINYI 333


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 355 TLVHRNLHLCLHLFLKVPATVIYILLI 275
           TL+     +   LF  +P T+I +L I
Sbjct: 216 TLIEHAFEISTMLFFVLPMTIIIVLYI 242


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 504 QQQLLDLPGIIEGAAQG 554
           Q +L+DL G +EG  +G
Sbjct: 306 QAELMDLKGDLEGLVEG 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,048
Number of Sequences: 438
Number of extensions: 3136
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)