Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060687.seq
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.4  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.4  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 148 KAQPVLNNIKL*HCISRVMGERN 216
           KA   L  +KL HC S V G RN
Sbjct: 236 KAMSDLMIVKLSHCNSYVDGGRN 258


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 287 QNSSSNPRTEDRSSSC*TTVYWDGGLHHQNFQARGCQGF 403
           Q+ SS+ R  D    C     +  G H+  F   GC GF
Sbjct: 25  QSPSSSSRILD--IPCKVCGDFSSGKHYNIFACDGCAGF 61


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 287 QNSSSNPRTEDRSSSC*TTVYWDGGLHHQNFQARGCQGF 403
           Q+ SS+ R  D    C     +  G H+  F   GC GF
Sbjct: 25  QSPSSSSRILD--IPCKVCGDFSSGKHYNIFACDGCAGF 61


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 518 SFHLRSSLGERVLQRIV 468
           S HLR ++G+R  Q ++
Sbjct: 135 SIHLRGAIGQRSCQVVI 151


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 473 YAEERARQETSG 508
           YA++R  Q+TSG
Sbjct: 606 YADDRVEQDTSG 617


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,412
Number of Sequences: 336
Number of extensions: 3353
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)